PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538708.1_FGP038
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 526aa    MW: 58901.3 Da    PI: 5.258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538708.1_FGP038genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.15.1e-5191361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGf FhP+d el+++yLkkk++g+k+e  e+i+evdiyk+ePwdLp+   v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd+
  KN538708.1_FGP038   9 LPPGFGFHPKDTELISHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDR 99 
                        79****************************.99***************5356667999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++  +++++g+kktLvf++gr p+g++t+W+mhey +
  KN538708.1_FGP038 100 AIKM-GKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 136
                        ***9.99*****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-593159IPR003441NAC domain
PROSITE profilePS5100555.5349159IPR003441NAC domain
PfamPF023651.2E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MESLRDMVLP PGFGFHPKDT ELISHYLKKK IHGQKIEYEI IPEVDIYKHE PWDLPAKCDV  60
PTQDNKWHFF AARDRKYPNG SRSNRATVAG YWKSTGKDRA IKMGKQTIGT KKTLVFHEGR  120
PPTGRRTEWI MHEYYIDERE CQACPDMKDA YVLCRITKRN DWIPGNGNEL DNSDPHPEPC  180
DAPPSVISTE QLNPDAEPVV GVEAAPVTVA EPDGVTTSAI TANIPSPSDG INLDDWLNEL  240
FDPFFDPEQS LASADLSPDE QNVESSKPNT TLHYSNVCEP STALVTAWKL ILTMKHVTVL  300
SLCILAHRAI FLLNLQNLGA LAPKVEQDYS SPNENVVDDT EYLLPEDVYN ILHPGTDDFN  360
MLQNPLDQYH IQYATDVWSE IQKEELWLPQ ANAEPSQSNE AADNGIIRRY RSMKTLETCV  420
PQCMGKTQAK MRVGINKMAT SSSESINQTI KFENSGRLVE HQKNQAHDVA STKRSDAGKP  480
STELSSNRGF LRGIRNAFAG CSDARWNMTL VAVFAIGVAV VALHNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-45616212172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538708.1_FGP038
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281870.0AB028187.1 Oryza sativa mRNA for OsNAC8 protein, complete cds.
GenBankAK1028080.0AK102808.1 Oryza sativa Japonica Group cDNA clone:J033108J08, full insert sequence.
GenBankGU1203470.0GU120347.1 Oryza sativa Japonica Group clone KCS602B05 NAC8 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649784.10.0NAC domain-containing protein 74
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A0E0MU870.0A0A0E0MU87_ORYRU; Uncharacterized protein
STRINGORUFI01G11090.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.14e-66NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]