PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538695.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 303aa    MW: 34248.8 Da    PI: 5.4315
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538695.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.2e-56221481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdee+v++yL++k++++++++  vi++v+++++ePwdLp+k+k +ekew+fF+++d+ky+tg r+nrat+sgyWkatgkdke+
  KN538695.1_FGP008  22 LPPGFRFHPTDEEVVTHYLTRKAQDRSFSC-VVIADVNLNNCEPWDLPSKAKMGEKEWFFFCHKDRKYPTGMRTNRATASGYWKATGKDKEI 112
                        79**************************99.78***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +g lvg+kktLvfy grap+gekt Wvmheyrl
  KN538695.1_FGP008 113 FRGRGLLVGMKKTLVFYMGRAPRGEKTPWVMHEYRL 148
                        **9*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6319172IPR003441NAC domain
PROSITE profilePS5100557.85622172IPR003441NAC domain
PfamPF023654.6E-2923148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSESEVSVIN HQEEEEETRL ELPPGFRFHP TDEEVVTHYL TRKAQDRSFS CVVIADVNLN  60
NCEPWDLPSK AKMGEKEWFF FCHKDRKYPT GMRTNRATAS GYWKATGKDK EIFRGRGLLV  120
GMKKTLVFYM GRAPRGEKTP WVMHEYRLDG KLPPNLPRSA KEEWAVCRVF NKDLAAKIAQ  180
MPPPPFPRND SFPLLDLDLD DFLHLDADLP PLIDDPFAST STLKTEPPPP ANLMHNHYGY  240
FSLPASAAPA TNGAMADQAI RRFCKAEAST ACFSGADADV DPVVDELLSF PDSITDYSYI  300
WKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5571772170NO APICAL MERISTEM PROTEIN
1ut4_B1e-5571772170NO APICAL MERISTEM PROTEIN
1ut7_A1e-5571772170NO APICAL MERISTEM PROTEIN
1ut7_B1e-5571772170NO APICAL MERISTEM PROTEIN
3swm_A2e-551217710173NAC domain-containing protein 19
3swm_B2e-551217710173NAC domain-containing protein 19
3swm_C2e-551217710173NAC domain-containing protein 19
3swm_D2e-551217710173NAC domain-containing protein 19
3swp_A2e-551217710173NAC domain-containing protein 19
3swp_B2e-551217710173NAC domain-containing protein 19
3swp_C2e-551217710173NAC domain-containing protein 19
3swp_D2e-551217710173NAC domain-containing protein 19
4dul_A1e-5571772170NAC domain-containing protein 19
4dul_B1e-5571772170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538695.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0738760.0AK073876.1 Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence.
GenBankAK1056450.0AK105645.1 Oryza sativa Japonica Group cDNA clone:001-200-F06, full insert sequence.
GenBankCT8415730.0CT841573.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105A13, full insert sequence.
GenBankCU4055640.0CU405564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F22, full insert sequence.
GenBankJN1854440.0JN185444.1 Oryza sativa Japonica Group NAC transcription factor 15 (NAC15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647863.10.0NAC domain-containing protein 87
SwissprotQ9FK442e-87NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0E0EGB20.0A0A0E0EGB2_9ORYZ; Uncharacterized protein
STRINGOMERI07G23780.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.25e-84Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]