PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538688.1_FGP146

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 882aa MW: 100247 Da PI: 5.8403

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538688.1_FGP146	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.3	1.2e-18	125	231	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkek.d 73 Y++YA+++GF+ ++++ ++ +g +++tf+C+ gk++ + +ek+ r+ a ++tgCka+l ++ ++ d KN538688.1_FGP146 125 LYKTYAYRTGFHAVRRTCHNY--EGLRYRSTFTCTHGGKARAGASPsdgsgaryplrsnkrvataQEKRARRGAAEKTGCKAMLIIRDRRaD 214 7*********999998887..7888********9998877899**********98888888999************99 PP FAR1 74 gkwevtkleleHnHela 90 +kw+v+ +eleHnH+++ KN538688.1_FGP146 215 DKWKVEFVELEHNHPCT 231 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-16	125	231	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.409	514	550	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0029	525	552	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MGEGSERPRS SRAARARNPS FEVEVVVEEE EEDEEEAAAA AARRVKREVA DDLNGEPAEE 60 EDDDDEEVVV EEDEEVVVAS DEEGGDGEAD CGGEVAVAFE PRTLEEALVP RVGAVFDSVD 120 EAFSLYKTYA YRTGFHAVRR TCHNYEGLRY RSTFTCTHGG KARAGASPSD GSGARYPLRS 180 NKRVATAQEK RARRGAAEKT GCKAMLIIRD RRADDKWKVE FVELEHNHPC TPDMVRFLKA 240 YREMLDSAKK KAKISDEMDD RVEKSLSEIA ETRKFPTRPK RSVGGGASVG GFRFSRSDSF 300 VQRFGDDDLI ALKKFIEAMQ RKKPNFIHYW DLDQETHVKN FFWTDSRSQA QYLTLTDFER 360 EWGAMVEQYK LKDNDWFSAL YSCRKQWAPG YVNHSFWAGT SAIRKVEKPD PYFDGVVTTK 420 TTLPVFLEQY ETTLRGKLER EAYDDLRSYY SRLTSLSGLP FEEQLMELYT VPMFQAFQDE 480 IKQLMHVICK EVDRSGNSIT YMASELIQGK KVDYTVVYNS ADKDVWCICR SFPSRGILCS 540 HALSVLKQEN VLMLPSKYIL NRWRKDFRVL HATASSSSIS SDRDLSIFND LYVHGHEYLE 600 DVIDIGAREP ELKEFVLTVM KEAKDKLVRP DHIQQGDQRV DVNMSVTGQV SADRGVDVNI 660 SSNSTALIQG DRRVDTNVTS NTTAMVHGHG DSMTSNTTAM IRGDRRVEMK IPTPHLIHGD 720 GRIDMNMASP HLMQRDRRVD MNMASPHMIQ GDRRVDMNLA SPHFIQSDRR VDMNLASSHL 780 IQGERRVDMN MTSPHLIQGD TRVDMNMVST AQNGMHSFDL MNVNLESGPL PMAATDFMQM 840 HQHPPVYHPK QLLNMRDQVM DTNKRPNMET NTYFMGGGMH VG

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MGEGSERPRS SRAARARNPS FEVEVVVEEE EEDEEEAAAA AARRVKREVA DDLNGEPAEE  60
EDDDDEEVVV EEDEEVVVAS DEEGGDGEAD CGGEVAVAFE PRTLEEALVP RVGAVFDSVD  120
EAFSLYKTYA YRTGFHAVRR TCHNYEGLRY RSTFTCTHGG KARAGASPSD GSGARYPLRS  180
NKRVATAQEK RARRGAAEKT GCKAMLIIRD RRADDKWKVE FVELEHNHPC TPDMVRFLKA  240
YREMLDSAKK KAKISDEMDD RVEKSLSEIA ETRKFPTRPK RSVGGGASVG GFRFSRSDSF  300
VQRFGDDDLI ALKKFIEAMQ RKKPNFIHYW DLDQETHVKN FFWTDSRSQA QYLTLTDFER  360
EWGAMVEQYK LKDNDWFSAL YSCRKQWAPG YVNHSFWAGT SAIRKVEKPD PYFDGVVTTK  420
TTLPVFLEQY ETTLRGKLER EAYDDLRSYY SRLTSLSGLP FEEQLMELYT VPMFQAFQDE  480
IKQLMHVICK EVDRSGNSIT YMASELIQGK KVDYTVVYNS ADKDVWCICR SFPSRGILCS  540
HALSVLKQEN VLMLPSKYIL NRWRKDFRVL HATASSSSIS SDRDLSIFND LYVHGHEYLE  600
DVIDIGAREP ELKEFVLTVM KEAKDKLVRP DHIQQGDQRV DVNMSVTGQV SADRGVDVNI  660
SSNSTALIQG DRRVDTNVTS NTTAMVHGHG DSMTSNTTAM IRGDRRVEMK IPTPHLIHGD  720
GRIDMNMASP HLMQRDRRVD MNMASPHMIQ GDRRVDMNLA SPHFIQSDRR VDMNLASSHL  780
IQGERRVDMN MTSPHLIQGD TRVDMNMVST AQNGMHSFDL MNVNLESGPL PMAATDFMQM  840
HQHPPVYHPK QLLNMRDQVM DTNKRPNMET NTYFMGGGMH VG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538688.1_FGP146

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134234	0.0	AC134234.3 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0019J12, complete sequence.
GenBank	AK101625	0.0	AK101625.1 Oryza sativa Japonica Group cDNA clone:J033052M07, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632258.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1E5UMH1	0.0	A0A1E5UMH1_9POAL; Uncharacterized protein
STRING	OS03T0255000-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-37	FAR1-related sequence 5