PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538684.1_FGP020

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 536aa MW: 58058.6 Da PI: 5.6494

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538684.1_FGP020	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	181	224	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++N + +Lr+l+P+ +K++ a+iL A++YI Lq KN538684.1_FGP020 181 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 224 89*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.10E-13	173	226	No hit	No description
SuperFamily	SSF47459	8.24E-16	173	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.37	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-14	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-12	181	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	181	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF51230	4.16E-9	444	530	IPR011053	Single hybrid motif
Gene3D	G3DSA:2.40.50.100	3.1E-4	480	531	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MAGGDHLLMK NSNAAAAAAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG 60 FCCSSELEAQ VSALLDLPSS IPLDSSSIGM HAQALLSNQP IWQSSSEEEE EADGGGGAKT 120 RLLVPVAGGL VELFASRYMA EEQQMAELVM AQELHGGDPE DDGDGEGRSG GAKRQQCKNL 180 EAERKRRKKL NGHLYKLRSL VPNITKMDRA SILGDAIDYI VGLQKQGNEL FVQVLWEHKP 240 GGFVRLMDAM NALGLEVINV NVTTYKTLVL NVFRVMVVRD NEVAVQADRV RDSLLEVTRE 300 TYPGVWPSPQ EEDDAKVAQK KMSIPKRLSC TFVGRWIEGS NGSHTPAHFA LAFSSLLAPP 360 PQSKTHTGHA RHELSGGGGD PRARALMAEE PATLDAPPPP LERSPQRESA VDEETRALVV 420 PDAGDLPPFP PSAVEANFAR YFVAASAHIA LKEEGGITAV DFNVGKSDRS EMKVTGKRKR 480 NAQHLQENSA LCKVCTSSNS FVVRCCVKGS LLEINDRLIK QPDLLNASAH TQQGDF

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MAGGDHLLMK NSNAAAAAAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG  60
FCCSSELEAQ VSALLDLPSS IPLDSSSIGM HAQALLSNQP IWQSSSEEEE EADGGGGAKT  120
RLLVPVAGGL VELFASRYMA EEQQMAELVM AQELHGGDPE DDGDGEGRSG GAKRQQCKNL  180
EAERKRRKKL NGHLYKLRSL VPNITKMDRA SILGDAIDYI VGLQKQGNEL FVQVLWEHKP  240
GGFVRLMDAM NALGLEVINV NVTTYKTLVL NVFRVMVVRD NEVAVQADRV RDSLLEVTRE  300
TYPGVWPSPQ EEDDAKVAQK KMSIPKRLSC TFVGRWIEGS NGSHTPAHFA LAFSSLLAPP  360
PQSKTHTGHA RHELSGGGGD PRARALMAEE PATLDAPPPP LERSPQRESA VDEETRALVV  420
PDAGDLPPFP PSAVEANFAR YFVAASAHIA LKEEGGITAV DFNVGKSDRS EMKVTGKRKR  480
NAQHLQENSA LCKVCTSSNS FVVRCCVKGS LLEINDRLIK QPDLLNASAH TQQGDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	189	ERKRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538684.1_FGP020

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119580	0.0	AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015688432.1	1e-112	PREDICTED: LOW QUALITY PROTEIN: transcription factor ABORTED MICROSPORES-like
Swissprot	Q6YUS3	2e-79	TDR_ORYSJ; Transcription factor TDR
STRING	OMERI02G00950.1	1e-90	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	4e-20	bHLH family protein

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]