PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538684.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 980aa    MW: 110852 Da    PI: 7.946
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538684.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-12111151445
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        W ++E+ ll+++++++G g+W+ +a+++g ++t  qc++++ 
  KN538684.1_FGP011 111 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKTKAQCIDHYT 151
                        *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002911.6E-104792IPR000433Zinc finger, ZZ-type
PfamPF005696.3E-95090IPR000433Zinc finger, ZZ-type
SuperFamilySSF578505.42E-1451114No hitNo description
CDDcd023355.19E-265199No hitNo description
PROSITE profilePS5013510.8245194IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135705380IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.87E-12104157IPR009057Homeodomain-like
PROSITE profilePS5129322.533106158IPR017884SANT domain
SMARTSM007172.4E-11107156IPR001005SANT/Myb domain
PfamPF002495.2E-12110151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-8111153IPR009057Homeodomain-like
CDDcd001672.04E-11111152No hitNo description
SuperFamilySSF466891.51E-21486575IPR009057Homeodomain-like
SuperFamilySSF638291.28E-53648885No hitNo description
Gene3DG3DSA:2.120.10.304.7E-60651974IPR011042Six-bladed beta-propeller, TolB-like
PfamPF030885.1E-29766853IPR018119Strictosidine synthase, conserved region
SuperFamilySSF638291.28E-53924976No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009058Biological Processbiosynthetic process
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
GO:0016844Molecular Functionstrictosidine synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MGRSRGVPNS GDDDTNHRSK RRRVASSGDA SDSLSAACGG AGEGGGKKAL YHCNYCNKDI  60
SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLSFPLICPD WNADEEILLL  120
EGIEMYGLGN WAEVAEHVGT KTKAQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA  180
KVQGESKKGT SVLPGDLTPK DESPFSPPRV KLFTNFLNLH RVEDALGEGL AGRSPSHIAG  240
GANKKASNVG QFKDSANVAK VEDGHVDRSI GVKKPRYSAD EGPSLTELSG YNSKRHEFDP  300
EYDNDAEQAL AEMEFKETDS ETDRELKLRV LRIYLSRLDE RKRRKEFILE RNLLFPNPSE  360
KDLTNEDKEV YHRYKVFMRF LSKEEHEALV RSVLEERKIR RRIQELQRWF CFYDGQECRS  420
AGCRTLAEAK IHIEQKRKKE HEVNAQKAKE SGQLLSNTKV VHKTNRPMKI ESDGNLDQKK  480
GGASLDSTGR DSPKTTGHAG TKHWDDWDIV GFPGAELLSA SEKNLCCQNR LLPNHYLKMQ  540
EVLMQEIFKG SVAKKEDAHV LFKVDPAKVD NVYDMQRLIN IESLEEIMAW QRKIERFQSS  600
LIQEQMEGEV FYLRSCQRFS VKNQTKHCIW WSQKSDGFLS DLALWKSTFH QKTLGPESVA  660
FDPLGRGPYT GVADGRVVRW DGARWVYFAH SSPNWTAELC GHKASPLDYL KDEHICGRAL  720
GLRFDRRTGD LYIADAYFGL LKVGPDGGLA TPLATEAEGV RFNFTNDLDL DDDGNVYFTD  780
SSIHYQRRHF MQLVFSGDPS GRLLKYDPNT KKATVLHRNI QFPNGVSMSK DGSFFVFCEG  840
SRGRLSRYWL KGEKAGTVDL FAILPGFPDN VRTNDKGEFW VAIHCRRSIY ARMVSRNVRL  900
RKFLLSLPIP AKYHYLMQIG GKLHALIIKY SPEGEVLDIL EDTTGQVVRA VSEVEEKDGK  960
LWIGSVLMPF IAVFDYANAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2fp8_A2e-446399194289Strictosidine synthase
2fp8_B2e-446399194289Strictosidine synthase
2fp9_A2e-446399194289Strictosidine synthase
2fp9_B2e-446399194289Strictosidine synthase
2fpc_A2e-446399194289Strictosidine synthase
2fpc_B2e-446399194289Strictosidine synthase
2v91_A2e-446539199280STRICTOSIDINE SYNTHASE
2v91_B2e-446539199280STRICTOSIDINE SYNTHASE
2vaq_A2e-446399194289STRICTOSIDINE SYNTHASE
2vaq_B2e-446399194289STRICTOSIDINE SYNTHASE
3v1s_A2e-446399194289Strictosidine synthase
3v1s_B2e-446399194289Strictosidine synthase
4imb_A2e-446539199280Strictosidine synthase
4imb_B2e-446539199280Strictosidine synthase
4iyg_A2e-446539199280Strictosidine synthase
4iyg_B2e-446539199280Strictosidine synthase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2340345RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538684.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0990010.0AK099001.1 Oryza sativa Japonica Group cDNA clone:J013102B14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631988.10.0transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A0E0D6V80.0A0A0E0D6V8_9ORYZ; Uncharacterized protein
STRINGOMERI03G30730.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]