PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN49093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 119aa MW: 13602.7 Da PI: 10.256 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.3 | 1e-21 | 50 | 117 | 52 | 118 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgek 118 + +e+ewyfF++rdkky++g r+n+a++sgyWka g+dk+++++ + + + +kk Lvfykgr pkg+k KHN49093.1 50 NYGEDEWYFFTPRDKKYPNGVRPNKAAASGYWKAIGTDKPIFTScGMKSITVKKALVFYKGRPPKGSK 117 33678**************************************977788*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.053 | 1 | 119 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-8 | 24 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.42E-22 | 43 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MNSQWELHRE RKGSMNLLTT QMVYSLLKQH QNLQPPVAMY AILEGMHGSN YGEDEWYFFT 60 PRDKKYPNGV RPNKAAASGY WKAIGTDKPI FTSCGMKSIT VKKALVFYKG RPPKGSKID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-24 | 51 | 119 | 68 | 134 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-24 | 51 | 119 | 68 | 134 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-24 | 51 | 119 | 68 | 134 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-24 | 51 | 119 | 68 | 134 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-24 | 51 | 119 | 68 | 134 | NAC domain-containing protein 19 |
4dul_B | 4e-24 | 51 | 119 | 68 | 134 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN49093.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235460 | 7e-82 | AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028184581.1 | 2e-40 | NAC transcription factor 25-like | ||||
Swissprot | Q8GY42 | 6e-31 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A0B2SVX3 | 3e-85 | A0A0B2SVX3_GLYSO; NAC domain-containing protein 29 | ||||
STRING | GLYMA05G15533.1 | 9e-40 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 3e-33 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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