PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48694.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 344aa    MW: 39075.2 Da    PI: 6.7909
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48694.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.5e-221053245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                + e+ snr+vt+skR+ gi+KKA+ELS+LCd++v +++fs+tgk
  KHN48694.1 10 KLESISNRHVTYSKRKSGIIKKAKELSILCDIDVVLLMFSPTGK 53
                57899*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.025153IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-24293IPR002100Transcription factor, MADS-box
CDDcd002667.75E-25284No hitNo description
PRINTSPR004041.2E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-191254IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRVKLKIKK LESISNRHVT YSKRKSGIIK KAKELSILCD IDVVLLMFSP TGKPTLLQGE  60
RSNIEEIIAK FAQLSPQERA KRKMESLEAL KKTFRKLDHD VKIQDFLGSS SQTMEELSYQ  120
VKVLQAQITE VQQRLSYWNN LEKINNLEHL RQMEDSLRES INRVGLQKEG MALPSMIASL  180
QDSQPLSWLL NDDNHHLMLP NEPKFQSFSD NTNRDVECST DISLPNYSGY IGSNKFEVGS  240
SPQVTTLGQG GGAMNELNGT TFLNVQCCDQ FAYPPPPDIE EVKQFPTMDN KSNTVDYQVH  300
NNFDLPRSLF ENGHQFWNSA SGSCGIAMFN ENNYHKVSSS FLFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-13192190MEF2 CHIMERA
6byy_B1e-13192190MEF2 CHIMERA
6byy_C1e-13192190MEF2 CHIMERA
6byy_D1e-13192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48694.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352461e-155AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209318.10.0agamous-like MADS-box protein AGL65 isoform X3
SwissprotQ7X9I04e-82AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A445KIC90.0A0A445KIC9_GLYSO; Agamous-like MADS-box protein AGL65
STRINGGLYMA17G10941.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-84AGAMOUS-like 65
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]