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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN48313.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 82aa MW: 9123.89 Da PI: 10.6064 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 131.4 | 2.4e-41 | 18 | 82 | 6 | 70 |
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 v +kG+nP livll+vgglll+flvgny+ly+yaqk+lPPrkkkP+skkk+k+e+lkqGv++PGe KHN48313.1 18 VGSKGFNPALIVLLLVGGLLLIFLVGNYVLYTYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 82 678*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 0.006 | 14 | 82 | No hit | No description |
Pfam | PF04689 | 1.3E-38 | 19 | 82 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MADDFEFSDK VPPSFDRVGS KGFNPALIVL LLVGGLLLIF LVGNYVLYTY AQKTLPPRKK 60 KPISKKKMKK ERLKQGVSAP GE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN48313.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091262 | 1e-137 | BT091262.1 Soybean clone JCVI-FLGm-7F15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542506.1 | 3e-52 | DNA-binding protein S1FA | ||||
Refseq | XP_028196050.1 | 3e-52 | DNA-binding protein S1FA-like | ||||
Swissprot | Q7XLX6 | 1e-14 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A445HFQ8 | 7e-51 | A0A445HFQ8_GLYSO; DNA-binding protein S1FA2 | ||||
TrEMBL | C6T1F6 | 7e-51 | C6T1F6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G20160.1 | 1e-51 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5409 | 33 | 55 |
Publications ? help Back to Top | |||
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