PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN48204.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 367aa MW: 42082.7 Da PI: 6.4018

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN48204.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.4	5.3e-25	2	98	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d+++ KHN48204.1 2 KWTDTMVRLLIMAVYYIGDEAGSEGtdkkkssglmQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtSCRVVENQSLLDSMD 98 7************99888886433456778888******************************************669********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.2E-22	2	123	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MKWTDTMVRL LIMAVYYIGD EAGSEGTDKK KSSGLMQKKG KWKSVSRAMM EKGFYVSPQQ 60 CEDKFNDLNK RYKRVNDILG KGTSCRVVEN QSLLDSMDLS PKMKEEVKKL LNSKHLFFRE 120 MCAYHNSCGH GNNNAPQQGE SGGEVSQPQA QPHHHQQQQQ QPQQRCFHSS EVGNLGGSGV 180 EGLRMLKVGN GEEGDDDSED DDVSEEDSDE DEDDSGEGGS RGHVGHGHED IEDENDGRSM 240 RKRARKVGGV SMSPQLMQQL SAEVSGVFQD VGKSAWDKKQ WMRSRIMQLE EQQISYHTQA 300 FELEKQRLKW ARFSSKKERE METAKLENER RRLENERMVL LIRQKEFELM SLQHQQQQQH 360 QQQHSST

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MKWTDTMVRL LIMAVYYIGD EAGSEGTDKK KSSGLMQKKG KWKSVSRAMM EKGFYVSPQQ  60
CEDKFNDLNK RYKRVNDILG KGTSCRVVEN QSLLDSMDLS PKMKEEVKKL LNSKHLFFRE  120
MCAYHNSCGH GNNNAPQQGE SGGEVSQPQA QPHHHQQQQQ QPQQRCFHSS EVGNLGGSGV  180
EGLRMLKVGN GEEGDDDSED DDVSEEDSDE DEDDSGEGGS RGHVGHGHED IEDENDGRSM  240
RKRARKVGGV SMSPQLMQQL SAEVSGVFQD VGKSAWDKKQ WMRSRIMQLE EQQISYHTQA  300
FELEKQRLKW ARFSSKKERE METAKLENER RRLENERMVL LIRQKEFELM SLQHQQQQQH  360
QQQHSST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN48204.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF350328	0.0	AF350328.1 Glycine max SHOOT2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028197992.1	0.0	putative mediator of RNA polymerase II transcription subunit 26 isoform X2
TrEMBL	A0A445HG04	0.0	A0A445HG04_GLYSO; Uncharacterized protein
STRING	GLYMA13G21350.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4820	34	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-67	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]