PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN48190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 454aa MW: 51109.3 Da PI: 4.941 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.2 | 1.5e-34 | 23 | 115 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d++l+ +isw ++g sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k+++++ weF ++ F++gkk+ll++i+ KHN48190.1 23 FLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFFNEAFQRGKKHLLKNIQ 110 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r++s+ KHN48190.1 111 RRRSS 115 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.02E-33 | 19 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.5E-54 | 19 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.8E-36 | 20 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.8E-18 | 23 | 46 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-30 | 23 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-18 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 62 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-18 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MNPNDANSPK PLEILQMNPV PPFLSKTFDL VDDPTLDPII SWGSTGFSFV VWDPLEFARI 60 VLPRHFKHNN FSSFVRQLNT YGFRKIDTDK WEFFNEAFQR GKKHLLKNIQ RRRSSQSQQV 120 GSYIGIECST EAGRSDVEIE IERLRKERTM LMEEVVDLKQ EQRRMAHRAG EVNQRLQSTE 180 QRQKQMVSFL VKLIQNPAFL ARLRHEEQKE IDSPRVVRKF VKQHQHETGT AETLQEGQIV 240 RYQHDWRNIG MSSETPKLSP VSIEQSPHYL SQGLAGEVSV GAEDLTAQIE NIVSNDLAAV 300 HGITVSQEIM IGEGLSSFGA EDPLFKGKSV MSPILEVPPE YFASFPEGLT KGKDFQDFSA 360 LGTEGMIKLE DIWDSGLNVS GAASGSGNEL WSNHVNYEEF PEFGVTSGMS DSDIWDIGLG 420 SLGIDKWPTD EPSLGETNGQ AGQPKEDRPK NFGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-24 | 20 | 117 | 17 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN48190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541445.1 | 0.0 | heat stress transcription factor A-3 | ||||
Refseq | XP_028197984.1 | 0.0 | heat stress transcription factor A-3-like | ||||
TrEMBL | A0A445HGD5 | 0.0 | A0A445HGD5_GLYSO; Heat stress transcription factor A-3 | ||||
TrEMBL | I1LZF5 | 0.0 | I1LZF5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G21490.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8782 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 8e-96 | heat shock transcription factor A3 |
Publications ? help Back to Top | |||
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