PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN47662.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 256aa MW: 27831.7 Da PI: 8.2842

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN47662.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	45.2	2.7e-14	4	63	1	55
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a pe+ r+ KHN47662.1 4 SCNGCRVLRKGCSEDCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPENLRP 63 6*****************************************************999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.56	3	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-10	4	63	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEN 60 LRPAGSYVKI VLKGEPITPI TSEAAANGRA PPLKAYDIRH VSKDQNSANE TPKTKTRSRF 120 KRTSGTLIKP KASKGTGFVP VEPEMANRTA SHESGLSHLS EATAMVEGES KESESVVSMD 180 TSNLIHEEPE WVAKTSDGTG ESGNEIGLEL TLGFEPVSRL HHVVPMKKRK IIELKSCGDS 240 AEKDSCKMEL GLEYPA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN47662.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541285.1	1e-179	LOB domain-containing protein 41
Refseq	XP_028195881.1	1e-179	LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-74	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A0B2STU1	0.0	A0A0B2STU1_GLYSO; LOB domain-containing protein 41
STRING	GLYMA13G07590.1	1e-179	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	8e-70	LOB domain-containing protein 41

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]