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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN47505.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 1039aa MW: 114532 Da PI: 5.426 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.2e-18 | 37 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l KHN47505.1 37 KGQWTPEEDDTLRNAVERFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65.7 | 8.6e-21 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++vk++G++ W+tIa++++ gR +kqc++rw ++l KHN47505.1 89 KGPWSKEEDEIIIELVKKHGPKKWSTIAQHLP-GRIGKQCRERWVNHL 135 79******************************.************996 PP | |||||||
3 | Myb_DNA-binding | 46.9 | 6.4e-15 | 141 | 183 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l+++++ +G++ W+ ++ ++ gRt++ +k++w+ KHN47505.1 141 KEAWTQEEELALIHYHQSFGNK-WAELSKVIP-GRTDNAIKNHWN 183 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.242 | 32 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-15 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-16 | 37 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 38 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-15 | 38 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-13 | 40 | 83 | No hit | No description |
PROSITE profile | PS51294 | 32.397 | 84 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-31 | 86 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-19 | 88 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-19 | 89 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.33E-17 | 91 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 96 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.492 | 140 | 190 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 140 | 188 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 141 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.44E-11 | 143 | 183 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 143 | 190 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1039 aa Download sequence Send to blast |
MDGEQSMAAP SHGQVDGAQK VRALHGRTTG PTRRSTKGQW TPEEDDTLRN AVERFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVKKHGPK KWSTIAQHLP 120 GRIGKQCRER WVNHLDPTIK KEAWTQEEEL ALIHYHQSFG NKWAELSKVI PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLT QFESVPHAGN LNQPTRLQCS RDDNGPKSTE GEEVSDCSQG 240 SANAVYFPSA TGPSSVDLQT GEAYRPNEEC SLGKDHSPSR ACSEPYYVSI DDVTICIPEI 300 AHQEACTSQF IEQQSHEPGN SICGDCQFNL HSLPNVSSMV LGQESSELQR DFIAPCEICD 360 MVNAPFQTSV ELGVSTSMGP ASMDSLKPEH MLISDDECCR VLFSDAMNDG CFPRVDYNKR 420 DDIVEFSGCT SFCQSCNIQI SETGGTSTSQ LTCPQCSNNY KGISSSQSVP LVLSASDDRL 480 GPTANGNQLF GMEDHHFVSR ACANFTYVNN ISSSCVDGVG SAVMEEPHDI LKGTSKLVPV 540 NNFGCGSDAK QTCNPTAEKT NVHTEKEGSG SLCYEPPRFP SLDIPFFSCD LVQSGSDMQQ 600 EFSPLGIRQF MMSSMNCLTP FRLWDSPSCD DSPDALLKSA AKTFTGTPSI LKKRPRDLLS 660 PLSDKRMDKK LETDMASSTF TRNFSSLVAA FGDNETRKAD MPSYSYPLQK QNSRASVDDD 720 NKENCGHTYK WEQLMNCSPI KSATLDEKNS QRDTVDGNSQ HNVKQRPLDS KMKTTEIEQQ 780 QSGILVEHDM NDLSLSSPDQ VGLKSDRGLD SSAKITKGLN KSLEAASNQS GHLKLSSKNP 840 CPRVNSCSPC VRAKEHEGLS VAVTRVQAPG DNSGEQTRKD GGFETCSIFG GTPFGTPSAW 900 KSPWFFNTFL SSPRLDTEIT IEDFGYFMSP GDRSYDALGL LKHISEQTAA TYANAQEILG 960 NETPKALPKD ASENDKDKDH ENNYPVNQSG NHSQLPSNAL IERRTLDFSE CETPGRDENS 1020 KSSAMSFSSP SSYLMKGCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-67 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-67 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN47505.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028210650.1 | 0.0 | transcription factor MYB3R-1-like | ||||
Refseq | XP_028210652.1 | 0.0 | transcription factor MYB3R-1-like | ||||
Refseq | XP_028210653.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A0B2SRH5 | 0.0 | A0A0B2SRH5_GLYSO; Myb-related protein 3R-1 | ||||
STRING | GLYMA17G26240.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Publications ? help Back to Top | |||
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