PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN47390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 391aa MW: 44802.6 Da PI: 4.628 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.3 | 8.1e-36 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sws++++sf+v+++ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +g+ +ll++i+ KHN47390.1 14 FLTKIYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPHLLKNIH 101 9********************999****************************************9998.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k KHN47390.1 102 RRKP 105 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.8E-39 | 4 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.33E-36 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.1E-63 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-20 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.4E-32 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-20 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MEEAQGSSSS LPPFLTKIYE MVDDPSTNSI VSWSATNRSF IVWNPPEFSR DLLPKYFKHN 60 NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPHLLKNI HRRKPVHSHS LQNIQGQGVS 120 SLTESERQSF KDEIEKLKHE KEQLLRELEM HEQEWKMYEV QLQHSNDRLE KLEKKQENLV 180 SSVSQVLQKP GIALNLLLLT ENMDRKRRLP RSGLFSDDAS IEDHMETSQV LPRENADGAS 240 IFSSSTERLD LLESSMTFWE NITHDVGDVF VQSHLNLDFD ESTSCADSPA ISCVQLEVED 300 QPKSHGINVS SEPAVVAAPD LDASKEQPVE TAPLTTGVND IFWERFLTEN PGSSEMQEAQ 360 SEREDSDGRS NAKFWWNIRN VNNPPEQMGH S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-26 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-26 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-26 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 208 | DRKRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN47390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340391.1 | 0.0 | heat stress transcription factor 29 | ||||
Refseq | XP_028191561.1 | 0.0 | heat stress transcription factor A-4a-like | ||||
Swissprot | O49403 | 1e-123 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | A0A445I8H4 | 0.0 | A0A445I8H4_GLYSO; Heat stress transcription factor A-4a | ||||
TrEMBL | I1M1P7 | 0.0 | I1M1P7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G29760.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3568 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-126 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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