 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
KHN47370.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 241aa MW: 27201.6 Da PI: 9.6093 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KHN47370.1 | genome | TCUHK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 99.3 | 1.5e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
KHN47370.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58
79***********************************************8 PP
|
| 2 | K-box | 59.2 | 1.7e-20 | 77 | 179 | 5 | 93 |
K-box 5 sgks.leeakaeslqqelakLkkeienLq.............reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89
sg ++ea+a+ +qqe++kL+++i+nLq + ++++G++L+sL+ k+L++Le++Lek++++iRskK+ l+++ + l+ k e ++
KHN47370.1 77 SGAGsASEANAQFYQQEADKLRQQISNLQnnnrqveclfhalGQEKQMMGDSLGSLTAKDLKNLETKLEKGISRIRSKKEIDLHNNNQLLRAKIAESER 175
33445899*********************6655555555555344689*********************************************999999 PP
K-box 90 enka 93
++++
KHN47370.1 176 NHHN 179
9887 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 34.132 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.1E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.01E-33 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 8.17E-45 | 2 | 71 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.3E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 8.9E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.3E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.3E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 10.733 | 87 | 195 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 3.6E-11 | 120 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN 60
SVKATIERYK KASSDSSGAG SASEANAQFY QQEADKLRQQ ISNLQNNNRQ VECLFHALGQ 120
EKQMMGDSLG SLTAKDLKNL ETKLEKGISR IRSKKEIDLH NNNQLLRAKI AESERNHHNM 180
AVLPGGSNYD SMQSSQQQFD SRGYFQVTGL QPNNQYARQD QMSLQLVLYV VLLVTKGDDG 240
E
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-21 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
