PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46985.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22820.6 Da    PI: 10.1763
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46985.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.64.5e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien+snrqvt+skR+ngilKKA+E+SvLCda+v++iif+ +gk++ey+s
  KHN46985.1  9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGVSGKMHEYIS 59
                79***********************************************86 PP
2K-box84.32.6e-2871140170
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                 yq++sgk l++ak+e+l++e+++Lkke++++q e+Rhl+Ged++sL++keL+ Le++Le++l+ +R+kK 
  KHN46985.1  71 YQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLSGVREKKA 140
                 78999***************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.258161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-35296IPR002100Transcription factor, MADS-box
CDDcd002651.23E-37280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-1882141IPR002487Transcription factor, K-box
PROSITE profilePS5129711.49684179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFGV SGKMHEYISP  60
YTTLIDVLDR YQRASGKTLW DAKHENLSNE IDRLKKENDS MQIELRHLKG EDITSLNYKE  120
LMALEDALEN GLSGVREKKA IFFNILIIAL YLFGQQKLNK FQLIRPFLFV PQMEVHRMFK  180
RNVRGSRFFH CVYIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-18191183MEF2 CHIMERA
6bz1_B8e-18191183MEF2 CHIMERA
6bz1_C8e-18191183MEF2 CHIMERA
6bz1_D8e-18191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0899010.0BT089901.1 Soybean clone JCVI-FLGm-3I15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236242.14e-98uncharacterized protein LOC100306010
RefseqXP_028234190.14e-98floral homeotic protein PMADS 2-like
SwissprotQ0HA259e-81MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A445K8971e-103A0A445K897_GLYSO; Floral homeotic protein GLOBOSA isoform B
STRINGGLYMA06G12380.12e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-67MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]