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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 26821.7 Da PI: 10.0348 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.2 | 2.2e-29 | 14 | 71 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktile...lmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFveav++LGG+e+AtPk il+ +m+v L ++hvkSHLQkYR+ KHN46940.1 14 KERLRWTQELHDRFVEAVNRLGGPERATPKGILKemkAMGVSELNIYHVKSHLQKYRI 71 68******************************7511167788999************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.897 | 11 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 12 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-15 | 13 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-22 | 14 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-8 | 16 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-12 | 103 | 142 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0034256 | Molecular Function | chlorophyll(ide) b reductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGSKQRLRGS ATAKERLRWT QELHDRFVEA VNRLGGPERA TPKGILKEMK AMGVSELNIY 60 HVKSHLQKYR ISKLIPESPT RGKLEKRSMS DILPNFSSIT ALQLKEVLQM QTGMQNRLRD 120 KTEVQRSLKL KIEAQGKYFE RIGQSNHSKT IIGKACKPFA TTIASLPSLF EESESLKTQP 180 EEEHQSAKKQ KISGEGVFPT SFDHESSTPP ECYNETWDFS WSQLAAACQS PLVPSFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-21 | 14 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-21 | 14 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-21 | 14 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-21 | 14 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092223 | 0.0 | BT092223.1 Soybean clone JCVI-FLGm-10K14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028213557.1 | 1e-177 | myb family transcription factor PHL7-like | ||||
Swissprot | Q9SJW0 | 2e-43 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0B2SPT9 | 1e-175 | A0A0B2SPT9_GLYSO; Myb family transcription factor APL | ||||
STRING | GLYMA18G43130.2 | 1e-175 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-45 | G2-like family protein |
Publications ? help Back to Top | |||
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