PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46723.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 681aa    MW: 74444.2 Da    PI: 4.4778
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46723.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08570618247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      + WT+eE++++ da++  ++      W+ I r ++ ++++ +++s+++++
       KHN46723.1 570 LLWTEEEEKKFEDAIRSNPPSpetyFWDHIFRAFP-TKSRADLVSYYFNV 618
                      66*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010146.4E-1322114No hitNo description
PROSITE profilePS5101117.20725118IPR001606ARID DNA-binding domain
SMARTSM005014.7E-1326119IPR001606ARID DNA-binding domain
SuperFamilySSF467745.49E-1646122IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.601.8E-1348124IPR001606ARID DNA-binding domain
PfamPF013881.4E-951112IPR001606ARID DNA-binding domain
SMARTSM007170.0013568621IPR001005SANT/Myb domain
SuperFamilySSF466894.37E-5572620IPR009057Homeodomain-like
PfamPF002493.3E-6572618IPR001005SANT/Myb domain
CDDcd001677.84E-6572619No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAGRLVLDGG VRVEDSGSIV GCSNDGSQRR FEELVSEFTS EICGSDSFLP FPPMLGDGKT  60
VDLYKLFLVV RGKGGYDAVC NGKLWDTVGE ESGLGVSIGS SVKLVYSKYL SALDAWLKKV  120
AESKVSPECC VVDDRDMFGR RLMELQAEVE GLLSSCAEDD AAREEEVKGG GDDDDDNVDG  180
RKLCGDGNGG CPDSEVLDCE KNESVLGNVG GGNKGGGGEG DGNGGCRDSE MPDREVNESV  240
NGNLGGGNDA MEAGEEFDGG KMSKEQVVDV LDGANYSVAG LLSGGEKCGD NDGRGLVMDP  300
PGGDSDDRKR KRDMLDLSDG DSDSSDCKRM RESALDMLSW VTGAAKNPCD PEVGSIPEKA  360
KWKSQSNQEV WKQVLLFREA AFLKRGSDTS SEQRSWQSQK MHPFLYEDHL GINYNLRERL  420
KCDKKILFGQ STPSARSSSD SSVGIENRTT SPNTEDPYDA NSGLDRCATV RIPLGGNRQA  480
EIPEWTGDIS EGYLKFSGTS IWPVATVNTR LRIEKDPIGK GRQDSCSCSA PGSVECVRFH  540
ITEKRAKVHL ELGAAFYDWN FDQVGEDVKL LWTEEEEKKF EDAIRSNPPS PETYFWDHIF  600
RAFPTKSRAD LVSYYFNVFI LERRGYQNRH TPDDINSDDD DDEAGPLRNV FGHQTPNSGY  660
QAPNPRGSIL LTPKKSQTKK K
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46723.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028207720.10.0AT-rich interactive domain-containing protein 1-like isoform X1
RefseqXP_028207721.10.0AT-rich interactive domain-containing protein 1-like isoform X1
TrEMBLA0A445GE050.0A0A445GE05_GLYSO; AT-rich interactive domain-containing protein 1
STRINGGLYMA07G07525.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]