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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARR-B | ||||||||
Protein Properties | Length: 584aa MW: 65791.9 Da PI: 5.0277 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77 | 2.4e-24 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl KHN46040.1 202 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 255 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 82.1 | 1.8e-27 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l+k y ev+++ ++eal++l+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ Ga KHN46040.1 20 VLVVDDDPTWLRILEKMLKKCLY-EVTTCCLATEALKKLRERKdaYDIVISDVNMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 114 89*********************.***************888889**********************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ ++el++ KHN46040.1 115 DYLLKPIRMKELRN 128 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.4E-146 | 2 | 569 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 3.98E-35 | 17 | 142 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 7.8E-44 | 17 | 156 | No hit | No description |
SMART | SM00448 | 5.0E-32 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.886 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-24 | 20 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.31E-30 | 21 | 134 | No hit | No description |
SuperFamily | SSF46689 | 3.4E-17 | 200 | 259 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 201 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-21 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 204 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MDNGCFSSPR HDAFPAGLRV LVVDDDPTWL RILEKMLKKC LYEVTTCCLA TEALKKLRER 60 KDAYDIVISD VNMPDMDGFK LLEQVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP 120 IRMKELRNIW QHVFRKRMHE ARDFESHEGF DFEGIHLMRN GSDHSDDGNL FAVEEITSIK 180 KRKDADNKHD DKEFGDHSPM KKARVVWSVD LHQKFVKAVN QIGFDKVGPK KILDLMNVPW 240 LTRENVASHL QKYRLYLSRL QKENDQKSSS SGIKHSDSPS KDPGSFSILD TANKQQNDVA 300 IDSFSYSDGS LLLQMDATSH EGNLKGIVSE PTTEKRRGST GDIPDPKIQK SSQKSLNQPF 360 TSVESSEANH AVFDCTIPTQ YSWSEFPKGP LKEEQKTLVQ LEDSLSQLPL HGNGTQHHIH 420 VDQSQSIASI NSNPSITEEE VAAKLETKPL YAGYESDYVS PVSSIGSAVE VFPSQSKSLM 480 VNDQSSEPTF TSNLSLKAQG FNRDCISDLD FYQRNLLLGG EVASAPLEED LNFFLLQTEC 540 YNMNFGLQNI DMSEYYDPRL IAEVPSHFYD SADYSSVDQS LFIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-17 | 198 | 260 | 1 | 63 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524159.1 | 0.0 | two-component response regulator ARR11 isoform X1 | ||||
Refseq | XP_028232650.1 | 0.0 | two-component response regulator ARR11-like isoform X1 | ||||
TrEMBL | A0A0B2SM23 | 0.0 | A0A0B2SM23_GLYSO; Two-component response regulator | ||||
TrEMBL | I1K3I8 | 0.0 | I1K3I8_SOYBN; Two-component response regulator | ||||
TrEMBL | K7KQ93 | 0.0 | K7KQ93_SOYBN; Two-component response regulator | ||||
STRING | GLYMA05G27670.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3999 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-119 | response regulator 11 |
Publications ? help Back to Top | |||
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