PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 51aa MW: 5844.77 Da PI: 10.2937 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.4 | 1.7e-22 | 2 | 44 | 9 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskR +g +KKA ELS LCda +a+i+fs+t kl+ey+s KHN46003.1 2 RQVTFSKRSKGFFKKALELSALCDAHIALIVFSTTSKLFEYAS 44 9****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-14 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.138 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-20 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-20 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-13 | 8 | 23 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-13 | 23 | 44 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 51 aa Download sequence Send to blast |
SRQVTFSKRS KGFFKKALEL SALCDAHIAL IVFSTTSKLF EYASSRYIFS Y |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by vernalization in a FLC-independent manner. Repressed by the floral homeotic genes AP1, LFY and SEP3 in emerging floral meristems to establish a floral identity and prevent inflorescence fate. Up-regulated at the shoot apex by SOC1. {ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235212 | 2e-49 | AC235212.1 Glycine max strain Williams 82 clone GM_WBb0020C20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025984529.1 | 4e-22 | MADS-box transcription factor 23-like | ||||
Swissprot | O82794 | 2e-16 | AGL24_ARATH; MADS-box protein AGL24 | ||||
TrEMBL | A0A0B2SMC2 | 4e-27 | A0A0B2SMC2_GLYSO; MADS-box protein AGL24 (Fragment) | ||||
STRING | GLYMA07G30040.3 | 1e-17 | (Glycine max) | ||||
STRING | XP_007159143.1 | 9e-18 | (Phaseolus vulgaris) | ||||
STRING | cassava4.1_020641m | 4e-18 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 7e-19 | AGAMOUS-like 24 |