PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TALE

Protein Properties

Length: 646aa MW: 71744.7 Da PI: 5.2771

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN45880.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	399	436	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + KHN45880.1 399 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 436 665559******************************88 PP
2	BELL	125.6	1.9e-40	270	341	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq l kk+kLls+l+eVdkrY+qy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi KHN45880.1 270 ERQTLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQI 341 6888999****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.5E-61	189	339	IPR006563	POX domain
Pfam	PF07526	2.9E-50	195	338	IPR006563	POX domain
PROSITE profile	PS50071	12.438	377	440	IPR001356	Homeobox domain
SMART	SM00389	1.6E-9	380	444	IPR001356	Homeobox domain
CDD	cd00086	1.25E-12	380	441	No hit	No description
SuperFamily	SSF46689	2.35E-17	381	447	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-28	383	446	IPR009057	Homeodomain-like
Pfam	PF05920	3.1E-17	397	436	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MYPNQAFSLG SYAEMMSGTS LFPHDYSETV GGGQNEVKFI TAMGETVTMH SINGHSNAAS 60 GDPACNSFAG DSHVVSRTQM GMVDSEQNIN CQGLSLSLGT LMPSNASVSP FQYQYHDTGL 120 LPLMNDFPNI KGTMSLKDDE ANNLHGEFRS VECMASVSSG GFHDMIKKEG FYNPNHPSMC 180 LKEVPSDLPG YSNSILNSQY LKAAQELLDE IVSVQKALKQ SGMEKQENNR DIGLDGSKDA 240 DGKSTSQSMQ MSSAPNGSSA NASSDLSSAE RQTLLDKKTK LLSMLDEVDK RYRQYCHQMQ 300 IVVSSFDMVA GCGAAEPYTT LALRTISRHF RCLRDAISGQ IQVTQRSLGE QEGIPRLRYV 360 DQQLRQQKAL QQLGVMRQAW RPQRGLPESS VSILRAWLFE HFLHPYPKDS EKIMLARQTG 420 LTRNQVANWF INARVRLWKP MVEEMYKEEF GDSEMNCNLS SENNTVKGKR DDVQESDNIN 480 NNNNKWEESQ DNLVTVDSVQ VQPQAEMDRV VNVENVVMNS GTGKLQGDQN QQRLGLNNNN 540 NSSSNFYSIS TNENGGDGGL MGTSTHATYD LSELGNFTVG SHVSLALELR NCENDGFAMS 600 DDAIQKRRKQ TLSSSPETDL LDYHFTDSGK QQHRFGNPHL LHEFVV

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MYPNQAFSLG SYAEMMSGTS LFPHDYSETV GGGQNEVKFI TAMGETVTMH SINGHSNAAS  60
GDPACNSFAG DSHVVSRTQM GMVDSEQNIN CQGLSLSLGT LMPSNASVSP FQYQYHDTGL  120
LPLMNDFPNI KGTMSLKDDE ANNLHGEFRS VECMASVSSG GFHDMIKKEG FYNPNHPSMC  180
LKEVPSDLPG YSNSILNSQY LKAAQELLDE IVSVQKALKQ SGMEKQENNR DIGLDGSKDA  240
DGKSTSQSMQ MSSAPNGSSA NASSDLSSAE RQTLLDKKTK LLSMLDEVDK RYRQYCHQMQ  300
IVVSSFDMVA GCGAAEPYTT LALRTISRHF RCLRDAISGQ IQVTQRSLGE QEGIPRLRYV  360
DQQLRQQKAL QQLGVMRQAW RPQRGLPESS VSILRAWLFE HFLHPYPKDS EKIMLARQTG  420
LTRNQVANWF INARVRLWKP MVEEMYKEEF GDSEMNCNLS SENNTVKGKR DDVQESDNIN  480
NNNNKWEESQ DNLVTVDSVQ VQPQAEMDRV VNVENVVMNS GTGKLQGDQN QQRLGLNNNN  540
NSSSNFYSIS TNENGGDGGL MGTSTHATYD LSELGNFTVG SHVSLALELR NCENDGFAMS  600
DDAIQKRRKQ TLSSSPETDL LDYHFTDSGK QQHRFGNPHL LHEFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	386	443	1	58	Homeobox protein Meis1
4xrs_B	2e-16	386	443	1	58	Homeobox protein Meis1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN45880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523566.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Refseq	XP_006577981.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Refseq	XP_006577982.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Refseq	XP_028227525.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Refseq	XP_028227526.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Swissprot	Q9FWS9	1e-112	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	A0A445KUQ6	0.0	A0A445KUQ6_GLYSO; BEL1-like homeodomain protein 3 isoform A
TrEMBL	K7KHT4	0.0	K7KHT4_SOYBN; Uncharacterized protein
STRING	GLYMA04G03150.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	1e-104	BEL1-like homeodomain 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]