PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 108aa MW: 12356.3 Da PI: 7.3014 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.2 | 1.5e-34 | 10 | 93 | 1 | 85 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lr+ C dC+++pyfp ++p+kfan+hk+FGa nv+kl +++++ +reda++sl+yeAea+++dPvyG+vg i+ l + KHN44818.1 10 PCDACKFLRK-CMMDCIFSPYFPPKEPQKFANMHKIFGACNVSKLQNEVQPYQREDAVNSLAYEAEAWIEDPVYGCVGAISVLLK 93 7*******98.********************************************************************987643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.797 | 9 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-33 | 10 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0004088 | Molecular Function | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MASSSYSNSP CDACKFLRKC MMDCIFSPYF PPKEPQKFAN MHKIFGACNV SKLQNEVQPY 60 QREDAVNSLA YEAEAWIEDP VYGCVGAISV LLKVQILHQH RERTFVQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 3 | 91 | 4 | 93 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 3 | 91 | 4 | 93 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44818.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090839 | 1e-110 | BT090839.1 Soybean clone JCVI-FLGm-5B3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516425.1 | 2e-77 | LOB domain-containing protein 25 | ||||
Refseq | XP_028199107.1 | 2e-77 | LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 1e-47 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A0B2SJ10 | 3e-76 | A0A0B2SJ10_GLYSO; LOB domain-containing protein 25 | ||||
TrEMBL | A0A445M2D5 | 8e-76 | A0A445M2D5_GLYSO; LOB domain-containing protein 25 | ||||
TrEMBL | I1J7M5 | 3e-76 | I1J7M5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G32340.1 | 6e-77 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF35013 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 5e-50 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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