PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 107aa MW: 12493.6 Da PI: 10.4743 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.8e-05 | 58 | 93 | 8 | 32 |
HHHHHHHHHHHHHHHHHCTSCCC............. CS HLH 8 rErrRRdriNsafeeLrellPkas...........k 32 + r+RR++i ++ +eL l+P + + KHN44812.1 58 VARQRRRKITKKTQELENLVPGEPkmnttemlhfvA 93 569******************963244444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.9E-6 | 49 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-6 | 53 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MSRTPKVLLR GKTCVLFTTR EELQQQLFYE IPQNGDNYVD LDWKKKGNER TISPQSLVAR 60 QRRRKITKKT QELENLVPGE PKMNTTEMLH FVATKYVKLP KLGCLNS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 64 | KKKGNERTISPQSLVARQRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44812.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006598645.1 | 7e-27 | transcription factor bHLH52 | ||||
Refseq | XP_028202025.1 | 7e-27 | transcription factor bHLH52-like | ||||
TrEMBL | A0A0B2SKL6 | 2e-73 | A0A0B2SKL6_GLYSO; Transcription factor bHLH52 | ||||
STRING | GLYMA15G41400.2 | 3e-26 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Publications ? help Back to Top | |||
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