PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 299aa MW: 33055.8 Da PI: 10.1644 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.5e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE++ l+ +v ++G g W+tI + R+ ++k++w+++ KHN44668.1 5 KQKWTAEEEQALKAGVVKHGVGKWRTILKDPEfssvlYLRSNVDLKDKWRNL 56 79***********************************88***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.192 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.93E-16 | 2 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.46E-19 | 6 | 56 | No hit | No description |
SMART | SM00526 | 7.0E-9 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 8.16E-15 | 118 | 197 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.5E-12 | 119 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 23.783 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 2.6E-7 | 123 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGAPKQKWTA EEEQALKAGV VKHGVGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNLSVMA 60 NGWSSREKSR LSVRRVHQVP RQDENSMAIT AVAPSDEEIV DVKPLQVSRD MVHIPGPKRS 120 NLSLDKLIME AITCLKENGG SNKTAIAAFI EDQYWALPGL KSMLSAKLKF LTASGKLIKV 180 NRKYRIAPIA AYSDRRRNSS VLYLEGRQKA SMKIDRDETN ILTRSQIDLE LEKIRSMTPQ 240 EAAAFAARAV AEAEAAIAEA EEAAKEAEAA EADAEAAQAF ADATTKSAKG RKSPKRIHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44668.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098318 | 0.0 | BT098318.1 Soybean clone JCVI-FLGm-23G7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001341119.1 | 0.0 | MYB transcription factor isoform 1 | ||||
Refseq | NP_001341120.1 | 0.0 | MYB transcription factor isoform 1 | ||||
Refseq | XP_028180708.1 | 0.0 | telomere repeat-binding factor 1-like | ||||
Refseq | XP_028180709.1 | 0.0 | telomere repeat-binding factor 1-like | ||||
Swissprot | Q8VWK4 | 2e-96 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A0B2SIK8 | 0.0 | A0A0B2SIK8_GLYSO; Histone H1 | ||||
TrEMBL | A0A0R0I303 | 0.0 | A0A0R0I303_SOYBN; Uncharacterized protein | ||||
TrEMBL | I1L0K3 | 0.0 | I1L0K3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G03390.1 | 1e-180 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-97 | telomere repeat binding factor 1 |