PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN44561.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 233aa MW: 26597.1 Da PI: 8.9935

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN44561.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3.1e-19	70	124	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F++++ ++ ++++ LAk+l+L rqV vWFqNrRa+ k KHN44561.1 70 RKKLRLSKEQALVLEETFKEHNSLNPKQKQALAKQLNLMPRQVEVWFQNRRARTK 124 788899***********************************************98 PP
2	HD-ZIP_I/II	124.9	3.7e-40	70	159	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e++ L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eLr +l KHN44561.1 70 RKKLRLSKEQALVLEETFKEHNSLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCENLTEENRRLQKEVQELR-AL 159 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.7E-8	1	72	IPR006712	HD-ZIP protein, N-terminal
SuperFamily	SSF46689	2.61E-18	54	127	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.459	66	126	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-17	66	129	IPR009057	Homeodomain-like
SMART	SM00389	4.9E-16	68	130	IPR001356	Homeobox domain
CDD	cd00086	5.07E-15	70	127	No hit	No description
Pfam	PF00046	1.4E-16	70	124	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	101	124	IPR017970	Homeobox, conserved site
Pfam	PF02183	6.0E-11	126	160	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.9E-25	126	169	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSEKDDGLGL GLSLKLGWGE NDDDNNNNLN HHQQQQYPFY VHKPPQSVPN QRASFNNLFH 60 FHDGDAEASR KKLRLSKEQA LVLEETFKEH NSLNPKQKQA LAKQLNLMPR QVEVWFQNRR 120 ARTKLKQTEV DCEYLKNCCE NLTEENRRLQ KEVQELRALK LSPQLYMNMN PPTTLTMCPS 180 CERVAVSSTS FSSSATMPSA LPPANLNPAG PTIQRPVPVN PWAAMLNQHR GRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	74	SRKKLRL
2	118	126	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269\|PubMed:10477292, ECO:0000269\|PubMed:11260495, ECO:0000269\|PubMed:8449400}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN44561.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269\|PubMed:8106086}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028225062.1	1e-106	homeobox-leucine zipper protein HAT3-like
Swissprot	P46602	3e-70	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
Swissprot	Q05466	1e-70	HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBL	A0A0B2SCT3	1e-173	A0A0B2SCT3_GLYSO; Homeobox-leucine zipper protein HAT3
STRING	GLYMA07G14270.2	1e-104	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	7e-71	homeobox-leucine zipper protein 3

Publications ? help Back to Top
Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development. Plant Signal Behav, 2014. [PMID:23838958] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Francisco M, et al. Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense. Front Plant Sci, 2016. 7: p. 1010 [PMID:27462337] Müller-Moulé P, et al. YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance. PeerJ, 2016. 4: p. e2574 [PMID:27761349] Ivarson E, et al. Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre. Front Plant Sci, 2016. 7: p. 2032 [PMID:28119714] Kasulin L, et al. A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina. Mol. Ecol., 2017. 26(13): p. 3389-3404 [PMID:28316114] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Singh M,Gupta A,Singh D,Khurana JP,Laxmi A Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth. Sci Rep, 2017. 7(1): p. 16101 [PMID:29170398]