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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 314aa MW: 35762.3 Da PI: 4.5942 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.5e-19 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k KHN44360.1 60 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.5 | 6.7e-42 | 59 | 151 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk + +L++++e+Lr+++ke KHN44360.1 59 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFGTLNQDNEALRKQIKE 151 69****************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.34E-20 | 40 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.929 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-18 | 58 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-16 | 60 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.69E-16 | 60 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-20 | 62 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.8E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.8E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.4E-17 | 115 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MKRLNSSDSS TALMTIFPSS STEEHSPRNS HHMYGREFRS MLDGLDEEGC VEEPGHQSEK 60 KRRLSVEQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD 120 YGVLKANYDA LKLNFGTLNQ DNEALRKQIK ELKSRLLQEE NTAGSGVSVK EEEITTMPAD 180 SEEKTMEQSK SDPPSETSNI NPSSESSEED HLNYECFNNN SDDCVVGGSA AASLLQVDFM 240 KDGSSDSDGS SAILNEDTMY LPSSMNCFQF QKPYHHAQYV KTEEHNFLSA DEACNFFSDE 300 QAPTLQWYCP EQWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 115 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44360.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235215 | 0.0 | AC235215.1 Glycine max strain Williams 82 clone GM_WBb0020M12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538603.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 | ||||
Refseq | XP_028196075.1 | 0.0 | homeobox-leucine zipper protein ATHB-6-like | ||||
Refseq | XP_028196076.1 | 0.0 | homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | P46668 | 6e-75 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A445HHY6 | 0.0 | A0A445HHY6_GLYSO; Homeobox-leucine zipper protein ATHB-6 isoform A | ||||
TrEMBL | I1LNH7 | 0.0 | I1LNH7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G37920.5 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1868 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-75 | homeobox protein 6 |
Publications ? help Back to Top | |||
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