PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN43954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 509aa MW: 55917.8 Da PI: 6.7516 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 84.4 | 1.1e-26 | 115 | 171 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkg+ef rsYY+Ct+++C +kk++++s+ ++++++ + g+Hnh+ KHN43954.1 115 KDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCLAKKQLQQSN-NGHITDSICIGQHNHP 171 7***************************************9.***************8 PP | |||||||
2 | WRKY | 103.7 | 1e-32 | 289 | 347 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d kvv++tYeg+H+he KHN43954.1 289 VNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKVVITTYEGQHDHE 347 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-23 | 107 | 173 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.336 | 109 | 173 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-22 | 110 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-29 | 114 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-21 | 115 | 171 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-35 | 274 | 349 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-28 | 281 | 349 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.635 | 284 | 349 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-37 | 289 | 348 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.7E-26 | 290 | 346 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MVSSDKSADQ NIPSDKLQQR VSLDSDTTLS QGHDTKNDLS KPEEASILSI VVKNEEGKDS 60 DAIACALESD QEGSTCSLPL EKPLQNPDTL SHELPRLQSS QEFPSIIRIR EKVSKDGYNW 120 RKYGQKHVKG NEFIRSYYKC THPNCLAKKQ LQQSNNGHIT DSICIGQHNH PRPQLNSTVS 180 VECVLPVVEQ APHKSSLATV EDKASVEHGC MPQQIQPLQS FPPAKVSPVN KLNASHLSLT 240 KAKNQVHDNE EPESKRLKKD NTNPDVTRVD MSTRESRVVV QTSSEVDLVN DGYRWRKYGQ 300 KLVKGNTNPR SYYRCSNPGC PVKKHVERAS HDSKVVITTY EGQHDHEIPP GRTVTQNAAT 360 NARTTASNGK AGTKSEGNIT DDTGERSGLG SASRLTEQLN GESITKSKAG DMVEFCVISL 420 SNEGPEIKLS EQQQQKDNSA TKDDSVSNDV ISHSSSGVLC RSNEQLKGEV KPISEGSKDC 480 LNVVAVHDTR STESEFNKQS TADAEPVQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-37 | 276 | 351 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN43954.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518571.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_028222491.1 | 0.0 | WRKY transcription factor 1-like | ||||
Refseq | XP_028222500.1 | 0.0 | WRKY transcription factor 1-like | ||||
Swissprot | Q9SI37 | 4e-78 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | A0A0B2SI70 | 0.0 | A0A0B2SI70_GLYSO; WRKY transcription factor 1 | ||||
STRING | GLYMA02G47650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9358 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 9e-79 | zinc-dependent activator protein-1 |
Publications ? help Back to Top | |||
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