PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN43682.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 271aa MW: 30166.8 Da PI: 8.424

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN43682.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.3	7e-13	201	244	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r rrk+kNRe+A rsR+RK+a+ eL kv Le+eN +Lkke KHN43682.1 201 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENVKLKKE 244 6889**************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-11	197	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	199	244	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-11	201	246	No hit	No description
Pfam	PF00170	2.6E-11	201	245	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.69E-10	201	249	No hit	No description
CDD	cd14707	4.02E-14	201	238	No hit	No description
PROSITE pattern	PS00036	0	204	219	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGIQTMGSQG NGQQSHLQPS SLSRQGSWYS LTLDEVNCQL GDMGKPLGSM NLDELLQNVW 60 TAEASKSLVI GAESENMSSS SSLQRQASLT LARALSGKTV DDVWREIQQG QKKRYGEDVK 120 SQEGEMTLGE TTLEDFLVQA GLFAEASISP AVGLDTMDSS AAQGFQQKTG LLSSPSIGSL 180 SDTRPGRKRD APDAYEKTLE RRLRRKIKNR ESAARSRARK QAYHNELVSK VSRLEEENVK 240 LKKEKEFEER LLPDPLLEPK YQLRRHNSAF F

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN43682.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543823.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X2
Refseq	XP_028195822.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X2
Swissprot	Q9C5Q2	5e-61	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A0B2SH82	0.0	A0A0B2SH82_GLYSO; ABSCISIC ACID-INSENSITIVE 5-like protein 3
STRING	GLYMA13G03880.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12464	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	6e-41	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]