PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42967.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 159aa MW: 17337.6 Da PI: 7.8619 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.7 | 1.3e-45 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++l e++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la++++ KHN42967.1 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLAEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQA 111 7**********************************************************************************************9997 PP DUF260 100 e 100 e KHN42967.1 112 E 112 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.511 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-45 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0004088 | Molecular Function | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MKDGGRKQGA PSPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQD 60 LAEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID VLQTQLAVAQ AEAVHLRVRQ 120 TASLYSPTSP TNSGSPSQAK PIFDMDMVVD QNSYGDSMW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-49 | 9 | 112 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-49 | 9 | 112 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42967.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031096 | 0.0 | KT031096.1 Glycine max clone HN_CCL_198 AS2 transcription factor (Glyma07g35000.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340932.1 | 1e-116 | LBD domain-containing transcription factor | ||||
Refseq | XP_028241406.1 | 1e-116 | LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 4e-73 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A445K026 | 1e-115 | A0A445K026_GLYSO; LOB domain-containing protein 4 | ||||
TrEMBL | I1KMA9 | 1e-115 | I1KMA9_SOYBN; AS2 transcription factor | ||||
STRING | GLYMA07G35000.1 | 1e-116 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-73 | LOB domain-containing protein 4 |
Publications ? help Back to Top | |||
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