PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42790.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1129aa    MW: 126217 Da    PI: 6.8104
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42790.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22126227199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l
  KHN42790.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKQQL 220
                 99*****************************954.4444.48************************************************..5578888 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 ++++ r+
  KHN42790.1 221 LLGIKRA 227
                 9988775 PP
2Auxin_resp121.56.5e-40252334183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaas++s+F+++YnPras+seFv++ +k++kal+++ s+GmRf+m+fete+s  rr++Gt++g++d+dpvrW+nS+Wr+L+
  KHN42790.1 252 AAHAASNNSPFTIFYNPRASPSEFVIPSAKYNKALYNHTSLGMRFRMMFETEESGVRRYMGTITGITDVDPVRWKNSQWRNLQ 334
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100178.90E-20125217No hitNo description
SMARTSM010191.7E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182126228IPR003340B3 DNA binding domain
PfamPF023624.9E-21126227IPR003340B3 DNA binding domain
PfamPF065075.0E-35252334IPR010525Auxin response factor
PfamPF023094.4E-99991088IPR033389AUX/IAA domain
PROSITE profilePS5174524.81910021095IPR000270PB1 domain
SuperFamilySSF542771.5E-810161080No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MKAPPSGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEAIL ASDMGLKQNQ  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPSA KYNKALYNHT SLGMRFRMMF  300
ETEESGVRRY MGTITGITDV DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD LGMKDASSSV FPGFSLMQWM  420
SMQQNNQFSA AQSGFIPPSM LSSNALHGNL TTDDPSKLLS FQAPVLSSPN LQFNKPNLAN  480
QVNQLQQSPT SWPPQQQQQQ QKLQSMLQTP LNPLQQQQQQ RQQQLPVPQN LSQPQQQQPQ  540
MPQQRAQQPQ QQQQQSCQQT IMSNGTVASN QIPNQCVQQP VTYSQLQQQQ LLSGSIPPQQ  600
SFQSPNKNAL LMTSLPQDSQ FQQQIDQQAS LLQRQQQQQT QLQSSPLQLL QQSLSQRASQ  660
QPQMTQMCQQ NSSEQQPQLQ LLQKLQQQQQ QQQQQQQQQQ QLLSTSSPLL QSQLLHQQNT  720
HQQNTHQQNQ QLPQLPLSQG HQPQQLGNNA FSMEKLLNGN NYSTSSLMQT QQLSVNQPHN  780
TQKSLTNTRA PSTLTDGDAP SCSTSPSTNN CQISPNLMKR NQHVPATLGG PSVLEPTNHL  840
MQGLHSKSEM QIKHELPSVR GTDQLKFKGT VADQMEASSG TSYCIDPNNI HQNSPLPNFC  900
MDGDVQSNPR NNLPFASNLD GLTPDTFLSR GYDSQKDLQN LLSNYGGAPR DIETELSTAA  960
LSPQPFGVPG IPFKPGCSSD IAINDPGVLN NGLWANQTQR MRTYTKVQKC GSVGRCIDVT  1020
RYKGYDELRH DLARMFGIEG QLEDPQRTEW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK  1080
ILSSAEVQKM SLDRDLGHVP VPNQACSGTD NGNAWRGQYE DNSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203972.10.0auxin response factor 19-like
TrEMBLA0A0B2SCK40.0A0A0B2SCK4_GLYSO; Auxin response factor
STRINGGLYMA15G19980.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]