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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42718.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 134aa MW: 15560.2 Da PI: 10.6201 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.3 | 5.6e-15 | 4 | 34 | 4 | 34 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdae 34 nksn qv fskRr g+lKKA+EL++LC+ae KHN42718.1 4 TNKSNLQVPFSKRRSGVLKKASELCTLCGAE 34 69***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.059 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-4 | 2 | 48 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.01E-13 | 2 | 34 | No hit | No description |
Pfam | PF00319 | 6.2E-13 | 2 | 34 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.72E-11 | 3 | 34 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MKMTNKSNLQ VPFSKRRSGV LKKASELCTL CGAERLPPHD TQFMGVNLHE LNAQLTKFTT 60 QLETEKKRAS ELKRLHQVVQ IQWWWAAPVN EMSISQLNEC KGALQQMKMN TTRKSEMILI 120 HTAINYPTLF FRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42718.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235200 | 1e-170 | AC235200.1 Glycine max strain Williams 82 clone GM_WBb0014O04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028189847.1 | 1e-66 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A445M687 | 2e-95 | A0A445M687_GLYSO; Agamous-like MADS-box protein AGL62 | ||||
STRING | GLYMA11G03261.1 | 2e-68 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-26 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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