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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 275aa MW: 31147.9 Da PI: 8.6663 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48 | 2.1e-15 | 191 | 216 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg KHN42418.1 191 FKTELCNKWQETGTCPYGDHCQFAHG 216 79***********************8 PP | |||||||
2 | zf-CCCH | 18.8 | 2.9e-06 | 229 | 253 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H KHN42418.1 229 YKTEVCRMVLA-GvVCPYGHRCHFRH 253 9**********.66**********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-19 | 186 | 223 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-11 | 187 | 222 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 190 | 217 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.004 | 190 | 218 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-12 | 191 | 216 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-11 | 224 | 257 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-8 | 224 | 258 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 228 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.803 | 228 | 256 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MVNRQSMCLN RLVETSKEVE ALREENGLLR AANKELQKAS SGQTQPTLFN VLHGFRGLHI 60 GEGNKENYAD WNNNNHNNQN HNNIMNNNNN NNKELQEVSD ESPTSVIENN NVVEVERFSL 120 PKSISVRSNG YLKMSQSAAL APNNNNATRN KGATRPRASA TPPEPVQKVY VRGGEKEEEP 180 LEMIVYNQGM FKTELCNKWQ ETGTCPYGDH CQFAHGIGEL RPVIRHPRYK TEVCRMVLAG 240 VVCPYGHRCH FRHALTEQEK AVVSQPKPRS MKLER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-22 | 191 | 257 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42418.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-142 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535712.1 | 1e-175 | zinc finger CCCH domain-containing protein 15 | ||||
Swissprot | Q9C9F5 | 2e-77 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A0R0HZS3 | 1e-173 | A0A0R0HZS3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G41531.1 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 8e-75 | C3H family protein |
Publications ? help Back to Top | |||
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