PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42147.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 267aa    MW: 28955.3 Da    PI: 6.4079
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42147.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.82.4e-333690155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  KHN42147.1 36 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 90
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.8843393IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-323491IPR009057Homeodomain-like
SuperFamilySSF466893.23E-173590IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-263691IPR006447Myb domain, plants
PfamPF002491.3E-73889IPR001005SANT/Myb domain
PfamPF143799.2E-25124170IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVPHKSQGGV EQLANAGVLG GSAVKIAAAP AGGSGKQRLR WTSDLHDRFV DAITQLGGPD  60
RATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYLPESPAD GKDSKVEKRN SGDSISGADS  120
SPGMPINDAL RMQMEVQKRL HEQLEVQKQL QMRIEAQGKY LQKIIEEQQK LGSNLTTSEA  180
LPLSHDEQNH PQSEASGSSE ALASTVSPLK KQRIDDGSKD GFTASQVRNA AQKNDCNVGQ  240
LDPNLYDDAG FEFDLETKKD EDNESGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ0073110.0HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576288.10.0MYB-CC domain-containing transcription factor PHR7 isoform X1
RefseqXP_006576291.10.0MYB-CC domain-containing transcription factor PHR7 isoform X1
RefseqXP_014628878.10.0MYB-CC domain-containing transcription factor PHR7 isoform X1
RefseqXP_028223943.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_028223944.10.0myb family transcription factor PHL7-like isoform X1
SwissprotQ9SJW07e-71PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A445L5L20.0A0A445L5L2_GLYSO; Myb family transcription factor PHL7 isoform C (Fragment)
TrEMBLA0A445L5W30.0A0A445L5W3_GLYSO; Myb family transcription factor PHL7 isoform A
TrEMBLK7KBW40.0K7KBW4_SOYBN; Uncharacterized protein
STRINGGLYMA03G00590.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130132330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.17e-73G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]