PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42136.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 270aa    MW: 31196.8 Da    PI: 7.0849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42136.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.26.9e-23111170359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg++WrKYGqKe+ +++++rsYYrCt++   +C+++k+v+r +edp + ++tY ++H+++
  KHN42136.1 111 DGHQWRKYGQKEILKAKYSRSYYRCTHKydqNCQATKQVQRIQEDPPLYKTTYLSHHTCN 170
                 9**************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-2395170IPR003657WRKY domain
SuperFamilySSF1182901.44E-22107170IPR003657WRKY domain
SMARTSM007742.6E-33109171IPR003657WRKY domain
PROSITE profilePS5081117.66111167IPR003657WRKY domain
PfamPF031063.7E-23111169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDDRKVLEEL VRGLEFANQL RQVMINGKDN ESSATTTTPF VQSLVKNVFR SFTNTLFLLD  60
KYPSYEVSHT TKSEDSQESC KGFTTRNKRG YYKRKRNTQE WEEVSKTPKV DGHQWRKYGQ  120
KEILKAKYSR SYYRCTHKYD QNCQATKQVQ RIQEDPPLYK TTYLSHHTCN DLLNYEIIPD  180
SNNNSPSDTS ILLSFNNTFP TPTKQECPFL SSFPSPISVK KLEEVIPASS SRHNNNVTLP  240
PPDPWDVMSN SAMCDSVGLD DVNLFLDFDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-201111691068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42136.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956450.0BT095645.1 Soybean clone JCVI-FLGm-15G11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028223930.10.0WRKY DNA-binding transcription factor 70-like isoform X1
TrEMBLA0A445L5R50.0A0A445L5R5_GLYSO; Putative WRKY transcription factor 70 isoform A
STRINGGLYMA03G00460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.12e-28WRKY DNA-binding protein 67
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]