PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42077.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 101aa    MW: 11936 Da    PI: 7.505
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42077.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind85.19.8e-271169260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl+k+y+++ed+ ++e+isw e+gn+fvv+++ +fak++LpkyFkh+nf+SFvRQLn+Y
    KHN42077.1 11 FLTKTYQLVEDPGTDEVISWGESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTY 69
                  9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-28369IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-27794IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.11E-24878IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-161134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-221169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-164961IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-166274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MLQQRSVPAP FLTKTYQLVE DPGTDEVISW GESGNTFVVW KHADFAKDLL PKYFKHNNFS  60
SFVRQLNTYV CFICCPFLIL LLSYLHDLVD FHRFMLFILL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-201691178Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963044e-95JN896304.1 Glycine max heat shock transcription factor HSFB1 mRNA, complete cds.
GenBankZ469534e-95Z46953.1 G.max mRNA for heat shock transcription factor 34.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340381.12e-44heat stress transcription factor 25
RefseqXP_028186257.12e-44heat shock factor protein HSF24-like
SwissprotQ652B02e-35HFB2C_ORYSJ; Heat stress transcription factor B-2c
SwissprotQ6Z9C81e-35HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A445HXF74e-43A0A445HXF7_GLYSO; Heat shock factor protein HSF24
TrEMBLA0A445M5095e-43A0A445M509_GLYSO; Heat shock factor protein HSF24 isoform B
TrEMBLI1LHE94e-43I1LHE9_SOYBN; Uncharacterized protein
STRINGGLYMA11G06010.16e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-37HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]
  3. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]
  4. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]