PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42007.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 344aa    MW: 36894.6 Da    PI: 5.5126
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42007.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.94.5e-23262324163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++ ++e++kl+se+
  KHN42007.1 262 ERELKKQKRKQSNRESARRSRLRKQAECEELQKRVESLGSENQTLREELQRVSEECKKLTSEN 324
                 89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.4E-28194IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1709.0E-19257321No hitNo description
SMARTSM003382.1E-21262326IPR004827Basic-leucine zipper domain
PfamPF001703.4E-20262324IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.082264327IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.97E-11265321No hitNo description
CDDcd147021.46E-23267317No hitNo description
PROSITE patternPS000360269284IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGTGEESTAK VPKPSSTSSI QIPLAPSYPD WSSSMQAYYA PGATPPAFFA SNIASPTPHS  60
YMWGSQHPLI PPYSTPVPYP AIYPPGNVYA HPSMAMTLST TQNGTEFVGK GSDEKDRVSA  120
KSSKAVSANN GSKAGDNGKA SSGPRNDGTS QSAESGSEGS SDASDENTNQ QESATNKKGS  180
FDQMLVDGAN ARNNSVSIIP QPGNPAVSMS PTSLNIGMNL WNASPAGDEA AKMRQNQSSG  240
AVTPPTIMGR EVALGEHWIQ DERELKKQKR KQSNRESARR SRLRKQAECE ELQKRVESLG  300
SENQTLREEL QRVSEECKKL TSENDSIKEE LERLCGPEAV ANLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278284RRSRLRK
2278285RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYGBFA0.0L01447.1 Glycine max G-box binding factor (GBF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237919.20.0G-box binding factor
RefseqXP_014619013.10.0G-box binding factor isoform X3
RefseqXP_028191175.10.0G-box-binding factor 1-like isoform X1
RefseqXP_028191176.10.0G-box-binding factor 1-like isoform X1
SwissprotP427743e-97GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A445HY350.0A0A445HY35_GLYSO; G-box-binding factor 1 isoform B
TrEMBLI1LHN80.0I1LHN8_SOYBN; Uncharacterized protein
STRINGGLYMA11G06960.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.12e-91G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]