PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41529.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 265aa    MW: 30901.7 Da    PI: 8.9986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41529.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd llv++v+++G g+W+++ar  g++R +k+c++rw +yl
       KHN41529.1 23 KGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                     79********************************************97 PP
2Myb_DNA-binding52.71e-1676120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
       KHN41529.1  76 RGQITPQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4981870IPR017930Myb domain
SuperFamilySSF466893.44E-3022117IPR009057Homeodomain-like
SMARTSM007176.5E-172272IPR001005SANT/Myb domain
PfamPF002498.3E-182370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-242477IPR009057Homeodomain-like
CDDcd001674.34E-122570No hitNo description
PROSITE profilePS5129424.92871125IPR017930Myb domain
SMARTSM007175.8E-1575123IPR001005SANT/Myb domain
PfamPF002491.5E-1476120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2478124IPR009057Homeodomain-like
CDDcd001673.42E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MYWGEVMAGH VGRGVLEEEV WRKGPWTAEE DRLLVEYVRL HGEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PQEESIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKSPSD AAEKARNRLM RKQQFHQQQQ QQEQLQQQHQ AQQQQMQFNF DMKGIMAMLE  180
DNIHRTPYIS QSRQEMINMH QNTTEEQGYL YSMLNDNSSA SSAPETSAEE VLWDGLWNID  240
DVHGNFSVAS AASKVGLYNL VAPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-28512510128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967530.0BT096753.1 Soybean clone JCVI-FLGm-15B2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184024.10.0transcription factor MYB82-like
TrEMBLA0A0B2SB460.0A0A0B2SB46_GLYSO; Transcription factor MYB2
STRINGGLYMA10G26681.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-82myb domain protein 305
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]