PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN41269.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 561aa MW: 64083.3 Da PI: 8.2665

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN41269.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.6	1.7e-28	26	109	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m++ +r+++lk+plWeevs+k++e g++rs+k+Ckek+en+ k+ k++ke++++++ + +++fdql+ KHN41269.1 26 RWPRQETLALLKIRSDMDTVFRDSSLKGPLWEEVSRKLAELGYQRSAKKCKEKFENVYKYNKRTKENKSGKSH--GKAYKFFDQLQ 109 8***************************************************************9999754..456****98 PP
2	trihelix	103	2.3e-32	381	466	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++e++++++ k+plWe++s++m++ g++rs+k+Ckekwen+nk++k+++e++k+r e+s+tcpyf++lea KHN41269.1 381 RWPKAEVHALIRIRTSLETKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKRVRESSKER-REDSKTCPYFHELEA 466 8*******************************************************************8.78999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.922	19	83	IPR017877	Myb-like domain
SMART	SM00717	0.13	23	85	IPR001005	SANT/Myb domain
CDD	cd12203	2.55E-23	25	90	No hit	No description
Pfam	PF13837	6.7E-19	25	111	No hit	No description
PROSITE profile	PS50090	6.829	374	438	IPR017877	Myb-like domain
SMART	SM00717	0.52	378	440	IPR001005	SANT/Myb domain
Pfam	PF13837	7.7E-22	380	467	No hit	No description
CDD	cd12203	4.47E-25	380	445	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MIGMDLDANS GEGNEGNNKM SFGGNRWPRQ ETLALLKIRS DMDTVFRDSS LKGPLWEEVS 60 RKLAELGYQR SAKKCKEKFE NVYKYNKRTK ENKSGKSHGK AYKFFDQLQA LENQFTVSYP 120 PKPQPTSTLT TTNTLTSDHG NKVISYVTTF PSTNPTLISP SPQTNTTTTT TTTTSTTNPR 180 DSSRPQTNNN NNSVTHSLPN MNTSFSTTTA STSSSTASDE DLEERYRRKR KWKDYFRRLT 240 RKVLLKQEEM QKKFLEAMDQ RERERVAQQD NWRMQEMARI NREHEILVQE RSTAAAKDAT 300 VIALLQKMYG QQNPTQQVEV EPPPQQKQTI PQSLPPILMP NNNFEVKKIN NGHSVTSTTT 360 GTVATAATTT TTSPVNSSSS RWPKAEVHAL IRIRTSLETK YQENGPKAPL WEDISIAMQR 420 LGYNRSAKRC KEKWENINKY FKRVRESSKE RREDSKTCPY FHELEALYKE KSKSSKNPFG 480 IFQNMKPNEM MLMMTEPLMV QPEQQWRPPP QSLEEGVGME NASEEYHENE ENGGDDDDNI 540 EEDGDSVEDE GANPCEIATN N

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MIGMDLDANS GEGNEGNNKM SFGGNRWPRQ ETLALLKIRS DMDTVFRDSS LKGPLWEEVS  60
RKLAELGYQR SAKKCKEKFE NVYKYNKRTK ENKSGKSHGK AYKFFDQLQA LENQFTVSYP  120
PKPQPTSTLT TTNTLTSDHG NKVISYVTTF PSTNPTLISP SPQTNTTTTT TTTTSTTNPR  180
DSSRPQTNNN NNSVTHSLPN MNTSFSTTTA STSSSTASDE DLEERYRRKR KWKDYFRRLT  240
RKVLLKQEEM QKKFLEAMDQ RERERVAQQD NWRMQEMARI NREHEILVQE RSTAAAKDAT  300
VIALLQKMYG QQNPTQQVEV EPPPQQKQTI PQSLPPILMP NNNFEVKKIN NGHSVTSTTT  360
GTVATAATTT TTSPVNSSSS RWPKAEVHAL IRIRTSLETK YQENGPKAPL WEDISIAMQR  420
LGYNRSAKRC KEKWENINKY FKRVRESSKE RREDSKTCPY FHELEALYKE KSKSSKNPFG  480
IFQNMKPNEM MLMMTEPLMV QPEQQWRPPP QSLEEGVGME NASEEYHENE ENGGDDDDNI  540
EEDGDSVEDE GANPCEIATN N

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN41269.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-165	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028207340.1	0.0	trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-135	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A0B2SAG9	0.0	A0A0B2SAG9_GLYSO; Trihelix transcription factor GT-2
STRING	GLYMA16G28240.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-117	Trihelix family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]