PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN40974.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24398 Da PI: 9.0001 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.2 | 5e-42 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l++el+++++ KHN40974.1 20 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRIRDPVYGCMGAISALQQQVQRLQVELNATRA 118 7**********************************************************************************************9998 PP DUF260 100 e 100 e KHN40974.1 119 E 119 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.68 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-42 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0004088 | Molecular Function | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGRKHFYGPT PGTTLNTVTP CAACKLLRRR CAEECPFSPY FSPHEPQKFA AVHKVFGASN 60 VSKMLMEVPE GQRADAANSL VYEANLRIRD PVYGCMGAIS ALQQQVQRLQ VELNATRAEI 120 LKYKYREAAC IISSHHHVAL VSSADAISIA AIPADSSQGL SQPQIQPHPP PPPPKPLPSP 180 PPPKPLPSPS ILLSSLSSSS ASSVYTPPKS TMSLGSISTT ENVPYFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-46 | 13 | 131 | 4 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-46 | 13 | 131 | 4 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN40974.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-136 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518338.2 | 1e-164 | LOB domain-containing protein 15 isoform X1 | ||||
Refseq | XP_006575444.1 | 1e-164 | LOB domain-containing protein 13 isoform X2 | ||||
Refseq | XP_028215056.1 | 1e-164 | LOB domain-containing protein 15-like isoform X1 | ||||
Refseq | XP_028215059.1 | 1e-164 | LOB domain-containing protein 13-like isoform X2 | ||||
Swissprot | Q9AT61 | 6e-72 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A445LSZ4 | 1e-163 | A0A445LSZ4_GLYSO; LOB domain-containing protein 13 isoform A | ||||
TrEMBL | I1JHK6 | 1e-163 | I1JHK6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G40080.2 | 1e-163 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 2e-67 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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