PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40789.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 350aa    MW: 40468.9 Da    PI: 6.0401
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40789.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.52.1e-29235319186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW++ ev+aLi++r+++e+++r   +k+  Wee+s++m   g++rs+k+Ckekwen+nk+yk++  + kkr  ++s+tcpyfd+l+
  KHN40789.1 235 RWPDVEVQALITVRTSLEHKFRFMGSKGSIWEEISEAMNGMGYNRSSKKCKEKWENINKYYKRTIGSGKKR-RQNSKTCPYFDELD 319
                 8*****************************************************************99998.78889*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.34228292IPR017877Myb-like domain
SMARTSM007170.0048232294IPR001005SANT/Myb domain
CDDcd122031.77E-23234298No hitNo description
PfamPF138378.1E-22234319No hitNo description
Gene3DG3DSA:1.10.10.606.3E-4234291IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDLFAGDHFP VPDHVAPFPD SGDLVFAADL LSHRPNPQKL RPIRSVPCRT IVAHLMLLIM  60
IGFICERESP QLGTTLHHPF LIRECFGLRS SLDAEDEDDD DNSSASTEGH GPIKKRRKTV  120
RKLEDFLKDL MAKVMEKQEQ MHEQLLEIIE NKERERIKRE EAWKNEEMER IRKDEEARAQ  180
VNSRNLALIS FIQNLLGHEI QIPQQPVEPC SKREEDEVEV SARKDLNNDP SDNNRWPDVE  240
VQALITVRTS LEHKFRFMGS KGSIWEEISE AMNGMGYNRS SKKCKEKWEN INKYYKRTIG  300
SGKKRRQNSK TCPYFDELDI LYRNGLLSIG NALSNTSDVP QIEVKELTET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534745.10.0trihelix transcription factor GTL1
RefseqXP_028180358.10.0trihelix transcription factor GTL1-like
TrEMBLA0A445IVJ10.0A0A445IVJ1_GLYSO; Trihelix transcription factor GT-2
TrEMBLI1L0390.0I1L039_SOYBN; Uncharacterized protein
STRINGGLYMA09G01670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-46Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]