![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN40757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 314aa MW: 34308 Da PI: 7.1016 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.1e-33 | 43 | 97 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl KHN40757.1 43 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-32 | 40 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.569 | 40 | 100 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.8E-24 | 43 | 98 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.27E-16 | 43 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-7 | 45 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.2E-15 | 138 | 183 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MYPRLIHPHD GIVTQDELQG GAASNLSHAH KGDPCLVLTA DPKPRLRWTQ DLHERFVDAV 60 TQLGGASKAT PKAIMRTMNV KGLTLFHLKS HLQKYRLGKQ SGKDVGEGCK DGSYLLESPG 120 ADNTSPKLPT PDTNEGYEIK EALRAQMEVQ SKLHLQVEAE KHLQIRQDAE RRYMAMLERA 180 CKMLADQFIS ATVIDTDSQK FQGIGSKAPR GTLVDPLGFY SLPSTEVAGV NVPEEEILPS 240 LPPQRADCST ESCLTSHESS GGLALEGSPG EGKRRMLGMD SMAAPLIWSE AKMRTQAINV 300 AQGNHPQGIT RYGM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00378 | DAP | Transfer from AT3G24120 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN40757.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT094230 | 0.0 | BT094230.1 Soybean clone JCVI-FLGm-24P5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242009.2 | 0.0 | MYB-CC domain-containing transcription factor PHR13 | ||||
Refseq | XP_028180000.1 | 0.0 | protein PHR1-LIKE 2-like | ||||
Swissprot | Q94A57 | 8e-64 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A445IVL4 | 0.0 | A0A445IVL4_GLYSO; Protein PHR1-LIKE 2 isoform A | ||||
TrEMBL | I1L075 | 0.0 | I1L075_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G02030.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24120.1 | 3e-66 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|