PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40637.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 299aa    MW: 33869.6 Da    PI: 6.1739
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40637.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86.1e-25123183259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDg++WrKYGqKe+ +++fpr+YYrCt++   gC+++k+v+r +e+p + ++tY g H+++
  KHN40637.1 123 DDGHQWRKYGQKEILNAKFPRNYYRCTHKfdqGCQATKQVQRVQEEPILYKTTYYGLHTCK 183
                 8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-26110184IPR003657WRKY domain
PROSITE profilePS5081119.933117180IPR003657WRKY domain
SuperFamilySSF1182901.26E-24120183IPR003657WRKY domain
SMARTSM007746.9E-37122184IPR003657WRKY domain
PfamPF031061.3E-24123183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MANLGCSSRR KAIEELLRGR DCAKQLRSVI NGSCEDGSST TPSFAEQLVK EVLMSFTNSL  60
SFLKNNPTSE SHDVSNVQVC ESPKSEDSQE SNCKSSTIKE RRGCYKRRRT EQTWEKESEA  120
PIDDGHQWRK YGQKEILNAK FPRNYYRCTH KFDQGCQATK QVQRVQEEPI LYKTTYYGLH  180
TCKNLANPEI ILDPMSPSSS SKFLSFDNSF PTPSKQECPF LSSSNLPSSV KGECKEEVPP  240
STSSNHYLIS SDLTFDSSPR HHVTLSSTLD SEYKSVDISD VLYDSAQLDD AFEPFLEFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-21122183869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40637.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753530.0EU375353.1 Glycine max transcription factor (WRKY57) mRNA, complete cds.
GenBankKT0312410.0KT031241.1 Glycine max clone HN_CCL_112 WRKY transcription factor (Glyma18g44560.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028215722.10.0WRKY DNA-binding transcription factor 70-like
TrEMBLB0LUS20.0B0LUS2_SOYBN; Transcription factor
STRINGGLYMA18G44560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-41WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]