PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40297.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 606aa    MW: 68281.1 Da    PI: 9.6355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40297.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-08514563147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
       KHN40297.1 514 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 563
                      567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.24E-6322411IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.674509568IPR017930Myb domain
SMARTSM007171.6E-7513566IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10514564IPR009057Homeodomain-like
CDDcd116601.28E-16515565No hitNo description
SuperFamilySSF466891.2E-15515596IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MVLQKRLNYG FNGYQVPVIP RASRSARGRG TIKKKPDNNQ IQAFEMLASV AGNFLQKNES  60
SDPKNVVFVE DPCSFCGTNI KDKYEDERRS FMRDSFDHGA CSEIASAFVP SMQGKHDNHR  120
GMGDSSFLDN HLEGQGQNVL EREDERIKRR SVNGKTIHIK GCSDGLIEPC HKVSKHCSLA  180
NNAEKPSLEC RKHLDSFPNG FTSRKLVNRD DDENLVRCTQ LNSKNNNTSG APPDMPKLKD  240
ASPIMSDENN SRDIFEFENL QRMYPFKKRK FFNQNSSSTS DRGSQCQGMF DSSDTTRVNG  300
TNHAIEESSS IVGQQAHSGS RACNVKLSIK SFKVPELFID IPETATIGSL KRTVMEAVTT  360
ILGDELHVGI LLQGKKVRDD SKTLIQTGIS QDDKRHRLGF MLEPRHTPIS PTSYNDDPCF  420
LTTSSRKKLS RQSTSLTLQQ GTYNVSKERS MIKIESCAKG DLNIVSSLED TSTNNNMSKC  480
RALVAVPAIN MEALAVVPFW RKSGNPDFAQ RRIRRPFSVL EVEALVQAVE KLGTGRWRDV  540
KQRAFDHAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLAA HAYWSQHQCK  600
HQLKPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-514986061109Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260269QRMYPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-92AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028240300.10.0telomere repeat-binding protein 5-like
RefseqXP_028240302.10.0telomere repeat-binding protein 5-like
SwissprotQ6R0E31e-101TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A445JWA30.0A0A445JWA3_GLYSO; Telomere repeat-binding protein 5 isoform A
STRINGGLYMA07G15940.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-94TRF-like 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]