PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40276.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 305aa    MW: 34606.8 Da    PI: 8.201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40276.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225779123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  KHN40276.1 57 YSCSFCRREFRSAQALGGHMNVH 79
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-65483No hitNo description
SMARTSM003550.00985779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEEDQCWIKS RRKYSMSSNL DSSTNYPSSY DDHSSWEEQA FAKDAARSGC TWPPRSYSCS  60
FCRREFRSAQ ALGGHMNVHR RDRARLKQPY SPQNEILSVD LEKITTQPLN SVQISFTSLG  120
YLYPSSLGVL THNNTNPNSD PYSHAPPSPS KVLVSSINKR GREKPQIPLY KGCHESSPDL  180
PSKSMSNLTE DFRFCSRRLD PEAGVEKKLK GLDSRCGSTE GDDDKTDVAV SLNLFMNLAR  240
PTVQFETKEK DTSFKKRKED ASSIPFFPKS CSVDRLHMQS KMFELSPSSI EELDLELRLG  300
YRSMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-135279229superman protein
2l1o_A7e-135279229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40276.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992220.0BT099222.1 Soybean clone JCVI-FLGm-16J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529128.10.0zinc finger protein 10
RefseqXP_028240323.10.0zinc finger protein 10-like
TrEMBLA0A445JWI10.0A0A445JWI1_GLYSO; Zinc finger protein 10
TrEMBLI1KK240.0I1KK24_SOYBN; Uncharacterized protein
STRINGGLYMA07G16300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.18e-27zinc-finger protein 10
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]