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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN40175.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 37509.3 Da PI: 7.1186 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.2 | 3.8e-54 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++++ KHN40175.1 10 VPPGFRFHPTDEELLYYYLRKKVSYEVIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKSIYHTN 107 69****************************.9***************943444443456**************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g++ktLvfy+grap+g+ktdW+mheyrl KHN40175.1 108 SKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-59 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.306 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-28 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MMPGNGQLTV PPGFRFHPTD EELLYYYLRK KVSYEVIDLD VIREVDLNKL EPWDLKDKCR 60 IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KSIYHTNSKR IGMRKTLVFY 120 TGRAPHGQKT DWIMHEYRLD EDDADVQEDG WVVCRVFKKK NQSRGFQQEL EEEEHLTTHM 180 RASGPCQVLE QKHLHMQGGP YDHYNFDGTM HLPQLFSPES AIAPPTNSSL ALSMNAMDIL 240 ECSQNLLRLT TTGCGLNLMQ QQQEERFSGD WSFLDKLLAS HHGMDQSKCN PPTNHHAATA 300 VGTSAQKFPF HYLGCDTTHD IMKFSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 7 | 164 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 7 | 164 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 7 | 164 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 7 | 164 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-52 | 7 | 164 | 17 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-52 | 7 | 164 | 17 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-52 | 7 | 164 | 17 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-52 | 7 | 164 | 17 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-52 | 7 | 164 | 17 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-52 | 7 | 164 | 17 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-52 | 7 | 164 | 17 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-52 | 7 | 164 | 17 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-52 | 7 | 164 | 14 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 7 | 164 | 14 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN40175.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-125 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006598233.1 | 0.0 | NAC domain-containing protein 76 | ||||
Refseq | XP_028203323.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Swissprot | Q9MA17 | 1e-117 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A0B2S4H8 | 0.0 | A0A0B2S4H8_GLYSO; Protein SOMBRERO | ||||
TrEMBL | A0A445GYP7 | 0.0 | A0A445GYP7_GLYSO; Protein SOMBRERO isoform A | ||||
TrEMBL | I1MJG9 | 0.0 | I1MJG9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G42050.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7204 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-108 | NAC family protein |
Publications ? help Back to Top | |||
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