PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39786.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 100aa    MW: 11394.9 Da    PI: 9.8859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39786.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-091558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++ ++   +W  +a+ +g g+++ ++k ++
       KHN39786.1 15 SWTPKQNKLFEKALAKYDKDtpeRWQNVAKAVG-GKSADEVKRHY 58
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-5962IPR009057Homeodomain-like
PROSITE profilePS5129310.5891166IPR017884SANT domain
SMARTSM007173.2E-81264IPR001005SANT/Myb domain
SuperFamilySSF466894.64E-131470IPR009057Homeodomain-like
CDDcd001677.70E-71562No hitNo description
PfamPF002494.0E-81558IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASSSLSKQK ASDSSWTPKQ NKLFEKALAK YDKDTPERWQ NVAKAVGGKS ADEVKRHYEI  60
LLEDLRHIES GRVPLPKYKS TGSSTNVDEE ERLLKYLKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-32689184RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39786.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150395e-73AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537885.29e-68protein RADIALIS-like 4
RefseqXP_028186442.19e-68protein RADIALIS-like 4
SwissprotQ1A1735e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445I0A32e-66A0A445I0A3_GLYSO; Protein RADIALIS-like 6
TrEMBLI1LJC82e-66I1LJC8_SOYBN; Uncharacterized protein
STRINGGLYMA11G12460.14e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-36RAD-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]