PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN39737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 190aa MW: 21247 Da PI: 10.5425 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 4.9e-14 | 45 | 90 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+ri++++ L+ l+P++ K +Ka +L +A+eY+k+Lq KHN39737.1 45 HNLYEKRRRSRIKEKMKALQNLIPNS-----NKTNKALMLDEAIEYLKQLQ 90 9************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-17 | 37 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.37E-12 | 38 | 94 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-17 | 38 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.005 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-11 | 45 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MASTIKENPN FVNPQLLFPL LYSSQQIPIP PLCSSSKRSR AVEFHNLYEK RRRSRIKEKM 60 KALQNLIPNS NKTNKALMLD EAIEYLKQLQ LQEQRNVKFL LRTNDVVALT MEEDPCKGSQ 120 RKCCKVYCSG GSSSTSPTIV ILHAVFVPPV SVVFFLRVGS PCSATAPPLV LSSPGKLRVV 180 FSLRASALLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN39737.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147727 | 2e-55 | BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624907.1 | 5e-58 | transcription factor NAI1 isoform X1 | ||||
TrEMBL | A0A0B2S659 | 1e-135 | A0A0B2S659_GLYSO; Transcription factor SPATULA | ||||
STRING | GLYMA17G21573.1 | 2e-57 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36497 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 1e-24 | bHLH family protein |
Publications ? help Back to Top | |||
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