PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39704.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 378aa    MW: 43479.9 Da    PI: 7.9391
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39704.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.91.2e-16271031290
        FAR1  12 FsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 F+ +k   +ks+ ng +++r+++C ++g++ +++ +    r+ ++etrtgC a+++++++ +gk++v+++e+eHnHel+
  KHN39704.1  27 FQHKKGFVNKSRINGAVVSRRYTCHRQGYHPNKNGT--YLRKLKQETRTGCLAHMTISRQPNGKFCVINFETEHNHELV 103
                 8888888999*******************9998877..99999**********************************97 PP
2FAR1842.4e-26150238190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fYn+YA +vGFsvrk++ ++sk +g++ +r f+C +eg+r+++k++  + +r+++ tr+gC a+l+++++ dg+++v+++e++H Hel+
  KHN39704.1 150 EFYNAYAGHVGFSVRKDYVNRSKVDGTVASRPFTCFREGFRHKDKQD-MNVKRPQKDTRIGCLAQLVISRRPDGRYNVSNFEEKHHHELV 238
                 6*******************************************999.999*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-1427103IPR004330FAR1 DNA binding domain
PfamPF031012.2E-23150238IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEDAENECPI SPEVVIDMGQ ESQTQKFQHK KGFVNKSRIN GAVVSRRYTC HRQGYHPNKN  60
GTYLRKLKQE TRTGCLAHMT ISRQPNGKFC VINFETEHNH ELVTPCTIHM LPSQKRLTFA  120
QAVEANLTES GFSGVPKLGM RFDFEEHAYE FYNAYAGHVG FSVRKDYVNR SKVDGTVASR  180
PFTCFREGFR HKDKQDMNVK RPQKDTRIGC LAQLVISRRP DGRYNVSNFE EKHHHELVAA  240
CRVHMLRSQK RLATTQVEKN AVDGSNLLPT STSESNCKAI ELKAFVNLDC DPMGHESEAI  300
NNILPQTNHQ ISVWHVYQDS VKQLSHVSVG FVSFVNDLRS CFFDHEEEYY VVNAWNALLD  360
KYDLQQNEWL QQIYGSRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39704.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579692.11e-171protein FAR1-RELATED SEQUENCE 7 isoform X2
RefseqXP_028231890.11e-171protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBLA0A0B2S5Z70.0A0A0B2S5Z7_GLYSO; Protein FAR1-RELATED SEQUENCE 7
STRINGGLYMA05G06351.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-24FAR1-related sequence 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]