PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN39485.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 403aa MW: 44701.8 Da PI: 8.9277 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.8e-32 | 273 | 326 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ KHN39485.1 273 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 326 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-15 | 270 | 326 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 271 | 326 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.8E-24 | 273 | 326 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.1E-7 | 274 | 325 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 403 aa Download sequence Send to blast |
MTLEGIFIEP TSTTTAPDLS LHISPPTISS LNSNYEPHES NFPSRTTTVS QQAHTELSLG 60 RNFTSETPIP TPHNPYYQSQ NHFHHLHHHH HNNNNTSTSV NTTSVVTSTT STTPLNHINY 120 GVSLLDVSSS DTLRPIKGIP VYHNRSFPFV ATMDHARDNL NNNNNNNKDH YHHHKMCLYN 180 HHNMPSYPSL SSSTATPSPS PYFVDPMSLL NNGSTMAACR AATATRFNGF SGDAFKSHHP 240 LHQYGVGPSE ASSGFMRSRF LQKLPNKRSM RAPRMRWTST LHARFVHAVE LLGGHERATP 300 KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DKPAASSGHS DGSGEDDLSP MVSTIVVVSD 360 NFPTTEGGRS GRHNKTWTTL PPPLLYGVIL QGTTLTNFHF YIV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 274 | 328 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 274 | 328 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 274 | 328 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 274 | 328 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 274 | 328 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 274 | 328 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 274 | 328 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 274 | 328 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN39485.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544358.1 | 0.0 | transcription repressor KAN1 | ||||
Refseq | XP_028199153.1 | 0.0 | transcription repressor KAN1-like | ||||
TrEMBL | A0A445HA69 | 0.0 | A0A445HA69_GLYSO; Transcription repressor KAN1 | ||||
TrEMBL | K7M8D2 | 0.0 | K7M8D2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G39260.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16560.1 | 9e-46 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|