PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN39243.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 841aa MW: 92956.2 Da PI: 6.5707

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN39243.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	17	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ KHN39243.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75 5679*****************************************************97 PP
2	START	174	9.2e-55	164	371	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+ ++ g+++l +++l KHN39243.1 164 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHSCTGVAARACGLVGLEPT-RVAEILKDRPLWFHDCRAVDVLNVLPTAngGTIELLYMQL 261 7899****************************************************.8888888888************9999****** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+p Rdf+ +Ry+ l++g++vi+++S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h++l+ ++++++lr+l++s+++ ++ KHN39243.1 262 YAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEPWSVPEVLRPLYESSTVLAQ 360 ***********************************9988899************************************************* PP HHHHHHTXXXX CS START 194 ktwvatlqrqc 204 kt +l++++ KHN39243.1 361 KTSIVALRHLR 371 999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.564	12	76	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	14	80	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-16	16	78	IPR009057	Homeodomain-like
CDD	cd00086	1.32E-16	17	77	No hit	No description
Pfam	PF00046	5.9E-16	18	75	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-18	19	75	IPR009057	Homeodomain-like
CDD	cd14686	2.66E-6	69	108	No hit	No description
PROSITE profile	PS50848	24.04	154	355	IPR002913	START domain
CDD	cd08875	2.36E-77	158	373	No hit	No description
SMART	SM00234	3.6E-40	163	373	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.7E-21	163	368	IPR023393	START-like domain
SuperFamily	SSF55961	3.3E-37	163	352	No hit	No description
Pfam	PF01852	3.0E-52	164	372	IPR002913	START domain
SuperFamily	SSF55961	4.73E-5	400	494	No hit	No description
SuperFamily	SSF55961	4.73E-5	524	599	No hit	No description
Pfam	PF08670	1.5E-50	698	840	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MSCKDGSRNG IGMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK 60 QIKVWFQNRR CREKQRKESS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH 120 TTQNTKQQPT KDTSCESAVT SGQQHNLTTQ HPPRDASPAG LLSIAEETLA EFLSKATGTA 180 VEWVQMPGMK PGPDSIGIVA ISHSCTGVAA RACGLVGLEP TRVAEILKDR PLWFHDCRAV 240 DVLNVLPTAN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VLEDGSLVIC ERSLKNTQNG 300 PSMPPVQHFV RAEMLPSGYL IRPCEGGGSI IHIVDHMNLE PWSVPEVLRP LYESSTVLAQ 360 KTSIVALRHL RQISHEVSQS NVTGWGRRPA ALRALSQRLS RGFNEALNGF TDEGWTTIGN 420 DGVDDVTILV NSSPDKLMGL NLSFANGFPS VSNAVLCAKA SMLLQNVPPA ILLRFLREHR 480 SEWADNNMDA YTAAAIKVGP CSLSGSRVGN YGGQVILPLA HTIEHEEFLE VIKLEGIAHS 540 PEDTIMPREM FLLQLCSGMD ENAVGTCAEL ISAPIDASFA DDAPLLPSGF RIIPLESGKE 600 ASSPNRTLDL ASALDIGSSG NRASNECAGN SSYMRSVMTI AFEFAFESHM QEHVASMARQ 660 YVRSIISSVQ RVALALSPSH LSSHAGLRSP LGTPEAQTLA HWICNSYRCY LGVELLKSNN 720 EGNESLLKSL WHHSDAILCC TLKALPVFTF SNQAGLDMLE TTLVALQDTP LEKIFDDHGR 780 KILFSEFPQI IQQGFVCLQG GICLSSMGRP VSYERVVAWK VLNEEENAHC MCFMFMNWSF 840 V

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MSCKDGSRNG IGMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TTQNTKQQPT KDTSCESAVT SGQQHNLTTQ HPPRDASPAG LLSIAEETLA EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIVA ISHSCTGVAA RACGLVGLEP TRVAEILKDR PLWFHDCRAV  240
DVLNVLPTAN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VLEDGSLVIC ERSLKNTQNG  300
PSMPPVQHFV RAEMLPSGYL IRPCEGGGSI IHIVDHMNLE PWSVPEVLRP LYESSTVLAQ  360
KTSIVALRHL RQISHEVSQS NVTGWGRRPA ALRALSQRLS RGFNEALNGF TDEGWTTIGN  420
DGVDDVTILV NSSPDKLMGL NLSFANGFPS VSNAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADNNMDA YTAAAIKVGP CSLSGSRVGN YGGQVILPLA HTIEHEEFLE VIKLEGIAHS  540
PEDTIMPREM FLLQLCSGMD ENAVGTCAEL ISAPIDASFA DDAPLLPSGF RIIPLESGKE  600
ASSPNRTLDL ASALDIGSSG NRASNECAGN SSYMRSVMTI AFEFAFESHM QEHVASMARQ  660
YVRSIISSVQ RVALALSPSH LSSHAGLRSP LGTPEAQTLA HWICNSYRCY LGVELLKSNN  720
EGNESLLKSL WHHSDAILCC TLKALPVFTF SNQAGLDMLE TTLVALQDTP LEKIFDDHGR  780
KILFSEFPQI IQQGFVCLQG GICLSSMGRP VSYERVVAWK VLNEEENAHC MCFMFMNWSF  840
V

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN39243.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003530112.1	0.0	homeobox-leucine zipper protein ATHB-15
Refseq	XP_014633132.1	0.0	homeobox-leucine zipper protein ATHB-15
Refseq	XP_014633133.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A445JQW2	0.0	A0A445JQW2_GLYSO; Homeobox-leucine zipper protein ATHB-15 isoform A
STRING	GLYMA07G01950.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1946	33	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]