PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38970.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 93aa    MW: 10478.1 Da    PI: 6.3368
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38970.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.3e-16240139
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                k+i+nk n qv fskR++g++KK +EL +LC+++ avii
  KHN38970.1  2 KKISNKCNLQVIFSKRQTGVFKKTSELATLCGVDLAVII 40
                68************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.208140IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-13144IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-6148IPR002100Transcription factor, MADS-box
CDDcd001202.62E-16144No hitNo description
PfamPF003191.7E-15340IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MKKISNKCNL QVIFSKRQTG VFKKTSELAT LCGVDLAVII PPPFFTQDLN EDPSIVDEDE  60
LHAHLNCLSN QIAVEKQHVK DLNHLLKATE DHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38970.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575989.11e-39agamous-like MADS-box protein AGL62
RefseqXP_028188651.11e-39agamous-like MADS-box protein AGL62
TrEMBLA0A0B2S1412e-61A0A0B2S141_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA02G30990.25e-39(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.11e-11AGAMOUS-like 28
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]